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Enhance converters support and add utils for handling hierarchies

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@dzoanka dzoanka released this 02 Jul 16:55
· 103 commits to main since this release
v0.4.0
a268f6e

  • Updated provenance utils, added checks in for missing data in input RO-Crate,
    and allowing to continue but logging errors in the process

  • Add HierarchyToHiDeFConverter, a class to convert a hierarchy network
    (in CX2 format) to a HiDeF format nodes and edges lists.

  • Add NDExHierarchyUploader, a class for uploading hierarchy and
    its parent network to NDEx.

  • Updated cellmaps_utilscmd.py apmsconverter, ifconverter,
    crisprconverter to support tissue as well as output
    data_info.json file to resulting RO-Crate so subsequent tools can
    more easily get provenance information

  • Updated cellmaps_utilscmd.py crisprconverter to consume .h5ad
    files and updated readme.txt file

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