inlabru 2.14.0

New features

• Add bru_names() method for extracting the inlabru standardised names of
  fixed effects, latent components, and hyperparameters from a fitted bru
  object. (version 2.13.0.9011)
• Add bm_logitaverage() mapper, for weighted logit-averages
  (version 2.13.0.9010)
• Add bm_reparam() mapper, for fixed-matrix reparameterisations of existing
  mappers (version 2.13.0.9019)
• Add bru_comp_env_extra() getter and setter methods for the env_extra
  element of bru_comp() objects, to allow storing extra information for use in
  component definitions. Mostly for internal use, but may be used by external
  packages needing to store and access special data.
  (version 2.13.0.9035)
• Add bru_input_text() methods for extracting the component input information
  as text, e.g. for use in error messages (version 2.13.0.9036)

Updated features

• Add bru_get_mapper() support for inla.cgeneric objects, and update
  the support for inla.rgeneric, to standardise where to store a
  pre-constructed mapper, so that external packages will no longer need to
  add their own bru_get_mapper() methods for their r/cgeneric sub-classes,
  if the mapper is pre-computed.
  (version 2.13.0.9005)
• Remove unused group and replicate parts of each latent component, speeding
  up component evaluation and linearisation. (version 2.13.0.9006)
• Allow index extraction from duplicated tags in bru_index(), returning
  all matching indices. (version 2.13.0.9014)
• Code refactor and storage updates for bru_obs() and bru_comp() objects
  to prepare for future extensions. For 2.14, the compatibility option
  bru_compat_pre_2_14_enable is set to TRUE (version 2.13.0.9015,
  2.13.0.9017, 2.13.0.9018)
• Add block_response element to bru_obs(aggregate_input) list input,
  to allow specifying a block-wise response variable to match for aggregated
  predictors. (version 2.13.0.9016)
• Deprecate the bru_obs(allow_combine) argument with its logical inverse,
  bru_obs(is_rowwise), to make the meaning clearer.
  (version 2.13.0.9017)
• Speed up control.gcpo friends structure generation for bru_obs() with
  large numbers of samplers or observations. (version 2.13.0.9028 with further
  speedup in 2.13.0.9029)
• Only enable control.gcpo computation in the final inla() iteration
  (version 2.13.0.9030)
• Only enable control.gcpo for "cp" models if control.gcpo list input
  is supplied (version 2.13.0.9031)
• Set option bru_compress_cp = FALSE by default, to avoid dense precision
  matrix blocks (version 2.13.0.9031)
• Convert sample.lgcp() to sf internals and output format
  (version 2.13.0.9033).

Bug fixes

• Fix logic for bru_set_missing<inla.surv>() to correctly handle the
  inla.surv() class variations (version 2.13.0.9002)
• Handle changing number of hyperparameters in inla tracing
  (version 2.13.0.9004)
• Robustify internal extended_bind_rows() method for unifying XY/XYZ sf
  coordinate columns (version 2.13.0.9009)
• Robustify sf coordinate handling in generate() and predict()
  (version 2.13.0.9027)
• Robustify sf coordinate handling in bru_obs_family_cp() for unifying XY/XYZ
  coordinate columns
  (version 2.13.0.9033)
• Add logic for bru_fill_missing() to handle missing values in sf input
  data, so that e.g. bru_fill_missing(input, input, input$values) works as
  expected (version 2.13.0.9022)
• Handle bru object upgrades from 2.12.0; the 2.12.0.9014 upgrade step needed
  to introduce the "bru_obs" class name earlier, and upgrades through
  2.13.0.9017, that introduced a new predictor expression storage system
  (version 2.13.0.9024)
• Fix bug in bru_obs_control_gcpo() for multi-observation models.
  (version 2.13.0.9025)