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5.0.0

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@github-actions github-actions released this 29 Aug 12:26
· 109 commits to master since this release
v5.0.0
c1df2c3

Release Notes

This release makes decombinator a CLI application, provides a performance boost to the collapsing step of the pipeline, and enables installation from PyPI.

Enhancements

  • Application is now hosted on PyPI
  • argparse subparsers used to create CLI app with 4 different modes: pipeline, decombine, collapse, translate
  • Symmetric deletion algorithm (as implemented in pyrepseq) collapses similar UMIs together -- 24x speedup when high UMI diversity present
  • scipy.sparse used for 2x memory saving in collapsing step
  • Integration and unit testing suite
  • Releases and testing pipelines added

Documention

  • Streamlined readme with updated instructions for new CLI app

Install decombinator 5.0.0

pip install decombinator
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