823 prune lbt07 to always keep any row@main

[BFalquet]

close #823

• new arguments to control the behavior of the lbt05 and lbt07 postprocessing to avoid pruning essential rows.

• fixing a bug in lbt05 where rows with non-zero data were punned when prune_0 = TRUE

• new utility functions for prunning.

• new map argument in lbt05 to specify the direction of abnormality

• add tests

• update snaphots

• update NEWS

thank you for the review

[github-actions]

Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  --------------------------------------------------------------------
R/ael01_nollt.R                  6       0  100.00%
R/ael02.R                       27       0  100.00%
R/ael03.R                       34       0  100.00%
R/aet01_aesi.R                 148       1  99.32%   214
R/aet01.R                      104       5  95.19%   77-80, 183
R/aet02.R                       44       0  100.00%
R/aet03.R                       76       0  100.00%
R/aet04.R                       88       0  100.00%
R/aet05_all.R                   11       0  100.00%
R/aet05.R                       44       1  97.73%   116
R/aet10.R                       42       0  100.00%
R/assertions.R                  93       7  92.47%   11-16, 123
R/cfbt01.R                     107       0  100.00%
R/checks.R                      14       0  100.00%
R/chevron_tlg-S4class.R         24       0  100.00%
R/chevron_tlg-S4methods.R      163       0  100.00%
R/cml02a_gl.R                    8       0  100.00%
R/cmt01a.R                      52       0  100.00%
R/coxt01.R                      49       1  97.96%   130
R/dmt01.R                       38       0  100.00%
R/dst01.R                       94       0  100.00%
R/dtht01.R                     102       6  94.12%   51, 55-59
R/egt02.R                       35       0  100.00%
R/egt03.R                       80       1  98.75%   157
R/egt05_qtcat.R                 78       0  100.00%
R/ext01.R                       85       2  97.65%   57, 213
R/fstg01.R                      43       0  100.00%
R/fstg02.R                      48       0  100.00%
R/kmg01.R                       35       6  82.86%   35-40
R/lbt01.R                       59       0  100.00%
R/lbt04.R                       90       0  100.00%
R/lbt05.R                      138       1  99.28%   55
R/lbt06.R                       70       0  100.00%
R/lbt07.R                       93       0  100.00%
R/lbt14.R                       64       0  100.00%
R/lbt15.R                       20       0  100.00%
R/mht01.R                       55       0  100.00%
R/mng01.R                       97      12  87.63%   86, 90-94, 126-130, 133, 178
R/pdt01.R                       60       0  100.00%
R/pdt02.R                       68       0  100.00%
R/report_null.R                 29       0  100.00%
R/rmpt01.R                      59       1  98.31%   132
R/rmpt06.R                     134       3  97.76%   209-212
R/rspt01.R                      73       3  95.89%   156-159
R/rtables_utils.R              319      23  92.79%   51, 68, 119, 243, 264, 372-379, 446, 461-463, 465, 534-540, 550, 571
R/standard_rules.R              13       0  100.00%
R/ttet01.R                     121       3  97.52%   203-206
R/unwrap.R                      36       0  100.00%
R/utils.R                      193      13  93.26%   299-302, 306-309, 336, 340, 352, 354, 368
R/vst02.R                       45       1  97.78%   109
R/zzz.R                          1       1  0.00%    2
TOTAL                         3609      91  97.48%

Diff against main

Filename                     Stmts    Miss  Cover
-------------------------  -------  ------  --------
R/ael01_nollt.R                -15      -1  +4.76%
R/ael02.R                      +27       0  +100.00%
R/ael03.R                      +34       0  +100.00%
R/aet01_aesi.R                  -2       0  -0.01%
R/aet01.R                      +10      +4  -3.74%
R/aet02.R                       -6       0  +100.00%
R/aet03.R                       -1       0  +100.00%
R/aet04.R                       -1       0  +100.00%
R/aet05.R                       +4       0  +0.23%
R/aet10.R                       -1       0  +100.00%
R/assertions.R                  -6      +1  -1.47%
R/chevron_tlg-S4class.R         +6       0  +100.00%
R/chevron_tlg-S4methods.R      +27      -4  +2.94%
R/cml02a_gl.R                   +8       0  +100.00%
R/cmt01a.R                      -6      -6  +10.34%
R/coxt01.R                      +1       0  +0.04%
R/dmt01.R                       +9       0  +100.00%
R/dst01.R                       -1       0  +100.00%
R/dtht01.R                      -1       0  -0.06%
R/egt02.R                       -2       0  +100.00%
R/egt03.R                       +3       0  +0.05%
R/egt05_qtcat.R                 -1       0  +100.00%
R/ext01.R                      +25      +1  -0.69%
R/fstg01.R                      -7       0  +100.00%
R/fstg02.R                      -7       0  +100.00%
R/kmg01.R                       +6      +6  -17.14%
R/lbt01.R                      +59       0  +100.00%
R/lbt04.R                       -1       0  +100.00%
R/lbt05.R                      +71      -4  +6.74%
R/lbt06.R                       -2      -3  +4.17%
R/lbt07.R                       -1       0  +100.00%
R/lbt14.R                       -2       0  +100.00%
R/mht01.R                      -16       0  +100.00%
R/mng01.R                       +1     +11  -11.33%
R/pdt02.R                       -1       0  +100.00%
R/report_null.R                +29       0  +100.00%
R/rmpt01.R                      -6     -10  +15.23%
R/rmpt06.R                    +134      +3  +97.76%
R/rtables_utils.R              +19      +4  -0.88%
R/standard_rules.R              +2       0  +100.00%
R/ttet01.R                      +4       0  +0.08%
R/unwrap.R                     +36       0  +100.00%
R/utils.R                     +109     +13  -6.74%
R/vst02.R                       -1       0  -0.05%
R/zzz.R                         +1      +1  +100.00%
TOTAL                         +538     +16  -0.08%

Results for commit: 062ed4c

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

  1 files   58 suites   3m 17s ⏱️
297 tests 296 ✅ 1 💤 0 ❌
744 runs  735 ✅ 9 💤 0 ❌

Results for commit 062ed4c.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
lbt05	💔	$2.60$	$+2.95$	$+49$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
lbt05	👶		$+0.78$	incomplete_map_argument_works_as_expected
lbt05	👶		$+0.69$	map_argument_works_as_expected
lbt05	👶		$+0.80$	prune_0_keeps_the_Any_Abnormaility_row

Results for commit 92b9369

♻️ This comment has been updated with latest results.

[shajoezhu]

add test for convert_to_month, various small comment

[shajoezhu]

lgtm! thanks @BFalquet , minor comments to consider