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pguenzi-tiberi edited this page Jul 27, 2022
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Welcome in Low coverage Genome Size Estimation wiki !
LocoGSE is a program which predicts the size of a genome thanks to a linear regression between the average estimated coverage and the experimental depth. This program can estimate a size but it can not compute a slope for a new family if this family is not in the database (lib/PlantFamilies.CoeffRegression.txt). For computing your own slope, please see [Linear Regression](Linear regression). This wiki contains a tutorial for [LocoGSE](LocoGSE Tutorial) and a tutorial in R.