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We recommend using Docker or Singularity - built containers are available for each release. Alternatively, you can install from the source code.
Get a Docker image of the latest release:
docker pull ghcr.io/iqbal-lab-org/cte:latest
All Docker images are listed in the packages page.
Alternatively, build your own Docker image:
sudo docker build --network=host .
Releases include a Singularity image to download. Each release has a file called cte_vX.Y.Z.img, where X.Y.Z is the release version.
cte_vX.Y.Z.img
X.Y.Z
Alternatively, build your own Singularity image:
singularity build cte.simg Singularity.def
Dependencies:
$PATH
Install by cloning this repository (or downloading the latest release), and running:
python3 -m pip install .