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Version 0.2.0

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@martinghunt martinghunt released this 12 Oct 09:56
v0.2.0
26c04ed

Backwards incompatible output compared to v0.1.0. Changes:

  • added --filter_pass option to up front filter records in input VCF
  • only reports one set of precision and recall, not filtered and unfiltered
  • algorithm change to fix problem with clustered SNPs and indels. Was incorrectly calling TPs as FPs in cases where indels caused ref/probe alleles to not be aligned in the right place. Solved by applying all filtered variants to the probe flanks.
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