Release v0.7a2

Changelog

[0.7a2] - 2025-12-23

Added

• Manual API calls documentation (manual_calls.md)

Fixed

• ReadTheDocs build failing due to missing myst_parser
• Trace module reference in documentation

Changed

• Docs Makefile now uses uv
• pyproject.toml cleanup

[0.7a1] - 2025-12-22

Added

• New Pipeline API with Pipeline.from_instrument() for simplified usage
• Click-based CLI replacing argparse (uv run reduce run UVES HD132205)
• Pydantic models for instrument configuration validation
• YAML instrument configs replacing JSON
• IPython startup script for interactive development
• plot_dir option to save plots as PNG files
• Fiber bundle tracing support for multi-fiber instruments
• filter_x and filter_type options for order tracing

Changed

• Rename mode to arm terminology throughout
• Output extension changed from .ech to .fits
• Documentation converted from RST to Markdown
• Trace detection parameters renamed (opower -> degree, filter_size -> filter_y)

Fixed

• Plotting issues with non-finite values
• Use interpolate_replace_nans for masked pixels

[0.6.0] - 2025-12-22

Added

• JSON schema validation test for instrument configurations
• GitHub workflow creates GitHub Release on tag push

Fixed

• Fix test_wavecal to match WavelengthCalibration.execute() signature
• Fix spec fixture to match ScienceExtraction.run() signature
• Fix instrument schema: replace invalid 'value' keyword with standard JSON Schema 'type'

[0.6.0b5] - 2025-10-04

Fixed

• Include *.pyd files for Windows builds
• Remove redundant build test from workflow

[0.6.0b4] - 2025-10-03

Changed

• workflow builds multi-arch wheels
• minor fixes to make build pass

[0.6.0b3] - 2025-10-02

Added

• Test organization with pytest markers (unit, instrument, slow, downloads)
• ANDES instrument configuration and settings

Changed

• CI now runs fast tests (~7s) on every push to master
• Test suite optimized with slow marker for tests >3s

Fixed

• ANDES instrument configuration errors (missing decker fields, regex pattern)
• NIRSPEC FITS header errors with illegal keywords containing dots
• Pre-commit hooks now documented and working correctly

[0.6.0b2] - 2025-10-02

Changed

• lazy imports
• cosmetic fixes like version string

[0.6.0b1] - 2025-10-02

Changed

• Modern build system using uv package manager
• Minimum Python version now 3.11, default 3.13
• Migrated build system from setuptools to Hatchling (PEP 517)
• Replaced black, isort, flake8, and pyupgrade with Ruff
• Improved code formatting across entire codebase using Ruff
• Modernized GitHub Actions workflow (uv-based, Python 3.11-3.13 matrix)
• Updated documentation to reflect modern installation with uv
• Consolidated legacy build files (setup.py, requirements.txt) into pyproject.toml
• Removed automatic PyPI publishing from GitHub Actions (now manual)
• GitHub Actions tests now manual-only on master branch
• Modernized ReadTheDocs build configuration

Fixed

• Close FITS file handles after reading to prevent resource leaks (#28)
• Store wavelength calibration in double precision instead of single (#30)
• Add fallback value for E_ORIENT header keyword (#31)
• Return final wavelength linelist with flags from calibration (#33)
• Fix MaskedArray filling in normflat routine
• Fix undefined TypeFilter import in NEID instrument
• Fix Sphinx documentation build warnings
• Fix pre-commit hook configuration issues

Documentation

• Updated README badges for GitHub Actions and Python versions
• Updated installation instructions to use uv instead of pip
• Improved documentation build process
• CLAUDE.md / AGENTS.md for AI-assisted development guidance