v1.4.0 - `SAES`

SAES v1.4.0 - 2025-11-15

Added

• Comprehensive test suite for Bayesian statistical tests (bayesian_sign_test, bayesian_signed_rank_test)
• Code of Conduct based on Contributor Covenant v2.1
• .editorconfig file for consistent code style across editors
• .pre-commit-config.yaml for automated code quality checks (black, flake8, isort)

Changed

• BREAKING: Renamed plot modules to lowercase for Python naming consistency:
  • SAES.plots.CDplot → SAES.plots.cdplot
  • SAES.plots.HistoPlot → SAES.plots.histoplot
  • SAES.plots.Pplot → SAES.plots.pplot
• Migrated from pip/venv to uv for faster, more reliable dependency management
• Reorganized dependencies in pyproject.toml into logical groups:
  • Runtime dependencies (core functionality)
  • [test]: Testing dependencies
  • [dev]: Development tools (black, flake8, mypy, isort, pre-commit)
  • [docs]: Documentation generation (Sphinx)
  • [html]: HTML notebook generation (papermill, nbconvert)
• Expanded CONTRIBUTING.md with detailed setup instructions using uv
• Updated README.md with uv installation instructions
• Improved documentation in docs/conf.py to dynamically read version from version.txt
• Updated GitHub Actions workflows to use uv for dependency installation
• Updated all notebooks to use new lowercase plot module names

Fixed

• Corrected 'frtom' typo to 'from' in all plot module docstrings (23 instances across 5 files)
• Removed debug code (if __name__ == "__main__" block) from HistoPlot.py
• Fixed pyproject.toml structure (moved requires-python to correct location)
• Restored corrupted boxplot.py and violin.py files

Documentation

• Populated CHANGELOG.md with complete version history from v0.5.1 to v1.3.6
• Replaced generic TODO comment in apv_procedures.py with comprehensive module docstring
• Added detailed examples and usage instructions throughout documentation