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v1.2.10
Patch release — bug fixes only, no API changes.
Fixed
- The
regnetagents-serverconsole script was broken:[project.scripts]
pointed directly at the asyncmain()coroutine, so the generated wrapper
called it synchronously and printed aRuntimeWarningwithout starting
the server. Added a sync entry-point wrapper. verify_installation.py's Git LFS check inspected the GREmLN
network_index.pklfiles, which are not Git-LFS-tracked (only
.csv/.h5/.pt/.h5adare). A missinggit lfs pullcould leave the
actual LFS-tracked TCGAnetwork.csvfiles as broken pointer stubs while
the script still reported all required checks passing. The check now
inspects a real TCGAnetwork.csvand is promoted from optional to
required.
Data licensing note (added 2026-10-03). This release's source archive includes TCGA tumor-state network files (models/networks/tcga/) derived from the Bioconductor package aracne.networks (F. M. Giorgi), which is distributed under a Columbia University software evaluation license (non-commercial academic research use only): https://bioconductor.org/packages/release/data/experiment/licenses/aracne.networks/LICENSE. These files are not covered by the MIT license, which applies to the RegNetAgents source code. v1.2.11 (https://doi.org/10.5281/zenodo.23128584) and later do not include these files; install them from Bioconductor with scripts/setup_tcga_networks.py.