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v1.2.8

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@jab57 jab57 released this 01 Sep 23:02

Patch release.
Fix: route Reactome TLS verification through the OS trust store (truststore) so pathway enrichment works behind
institutional TLS-inspecting proxies (Zscaler, Netskope, Norton). Guarded import falls back to certifi if truststore
is absent. test_reactome_agent now tolerates an unreachable API. No API/behavior change otherwise.


Data licensing note (added 2026-10-03). This release's source archive includes TCGA tumor-state network files (models/networks/tcga/) derived from the Bioconductor package aracne.networks (F. M. Giorgi), which is distributed under a Columbia University software evaluation license (non-commercial academic research use only): https://bioconductor.org/packages/release/data/experiment/licenses/aracne.networks/LICENSE. These files are not covered by the MIT license, which applies to the RegNetAgents source code. v1.2.11 (https://doi.org/10.5281/zenodo.23128584) and later do not include these files; install them from Bioconductor with scripts/setup_tcga_networks.py.