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v1.3.0

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@jab57 jab57 released this 07 Oct 14:26
· 2 commits to main since this release
v1.3.0
0941ed5

v1.3.0

  • Fix symbol lookup for GREmLN genes with placeholder IDs (restores genes such as CDH1 and RNF43 in cross-network comparisons).
  • IntOGen (release 2024.09.20, CC0) is now the bundled cancer-gene reference set.
  • Regulatory roles on TCGA networks use percentile thresholds, with one shared classifier across all role paths.
  • TCGA networks are installed from the authors' Zenodo record by scripts/setup_tcga_networks.py, and a file is installed only after its SHA-256 checksum passes.
  • Added a focal-vs-random-gene tier-specificity analysis (supplementary Table S3).
  • Added data-licensing notices for the bundled GREmLN networks and the supplementary tables.
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