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Cran Release v0.1.6

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@munoztd0 munoztd0 released this 11 May 15:09
· 9 commits to main since this release
fe71157

Fixed

  • Fixed s_kaplan_meier() range censoring indicator handling to no longer produce NA values in the output when either all subjects are censored or none are censored.
  • Aligned a_freq_resp_var_j() with a_freq_j() by adding .formats and na_str parameters to allow user customization of output formatting and NA string representation (#67).
  • Fixed the hanging indent in the first column of the body of the table (#138)
  • Export leftside(), postfun_eq5d ac_blank_line and tt_to_tblfile
  • Minor bugfix in DOCX exporter when calculating the number of pages (#188)
  • Fixed tt_to_flextable_j() to have correct left-indentation in header col 1 (#171) and footer first line starting with newline (#171)
  • Fixed relative risk difference derivations for combined column facets in a_freq_j(), a_freq_resp_var_j() and a_eair100_j() (#195)
  • Fixed calculation of 'reduce_first_col_indentation' and section break positions in insert_keepNext_vertical_pagination() (#218)
  • Fixed the little gaps in neighboring spanning headers in the docx exporter (#216)
  • Fixed blank pages happening at the end of the docx (#177)
  • DOCX exporter fixed watermark location in case of listings
  • DOCX exporter updated table border width from 0.75 to 0.875 inches
  • DOCX exporter when having vertical pagination in tables or listings, fixed the rows misalignment from page 2 and below compared to RTF
  • Fixed bug in s_summarize_desc_j() when applied to almost constant data due to behavior from t.test.default() (#257)
  • tt_to_tlgrtf() now is passing vectorized colwidths when exporting 'allparts' to match the colwidths of the individual parts (#225)

Changed

  • Moved safe_t_test() from a_summarize_aval_chg_diff.R to a new file safe_t_test.R,
  • Moved add_blank_line_rcells() from s_functions.R to blank_line.R.
  • changed return value n for s_ancova_j into n_fit, to differentiate between these two statistics for combined function s_summarize_ancova_j() (#117)
  • added default label for median_range "Median (min, max)" in junco_default_labels_start
  • changed label from "experimental" to "stable" for default_stats_formats_labels
  • refactored functions tt_to_flextable_j() and export_as_docx_j()
  • created generic wrapper function export_TLG_as_docx(), which now calls export_as_docx_j() and export_graph_as_docx() (#173)
  • Functions export_as_docx_j() and export_graph_as_docx() still exist but are now internal, i.e. not exported
  • updated vignette to explain correctly how to insert newlines in the headers of Tables and Listings (#179)
  • "watermark" argument in the docx exporter is now a String instead of a Boolean (#181)
  • faster docx unit tests (#197)
  • LS means tabulation uses very slightly updated column header (no blanks around the hyphen in "Testing-Reference")
  • Bump flextable and remove the skip() units tests (#193)
  • Update colwidths tests to derive values
  • Fix old TODOs in tests
  • docx exporter added missing defaults (#186)
  • Changed all snapshot tests to cran = TRUE
  • Footnotes in docx and RTF outputs are now 1 table row/cell (#285)
  • removed label "experimental" for theme_docx_default_j, tt_to_flextable_j and export_TLG_as_docx

Added

  • Added multi-comparator functionality (#271)
  • Hotfix: Added several new functions for creating the Vital Sign tables for core and clinpharm:
    a_summary_diff_mvars(), a_summary_j(), c_summary_subset_label(), filter_df_prior_afun(),
    prepend_label_cell(), s_diff_mean_ci(), s_summary_diff(), safe_t_test() (#304).
  • Added option to perform a_summarize_ancova_j in a layout with a combined column facet (#117) + slight change in return value for s_ancova_j(), now we have n_fit instead of n returned
  • Added option to switch on/off the export of the csv in both tt_to_tlgrtf() and export_as_docx_j()
  • Added option to specify the output folder for the csv
  • Added argument 'validate' to export_TLG_as_docx() and tt_to_flextable_j() (#213)
  • Added "watermark" argument in the docx exporter for Figures (#181)
  • Added argument mult_adj_emmeans in fit_mmrm_j() to enable (single-step or step-down) Dunnett multiplicity adjustment for LS means contrasts (p-values and confidence intervals) for more than one experimental arm within visits.
  • Added option for subgroup variable in the vars argument of fit_mmrm_j() to enable fitting an overall MMRM with subgroup interaction terms.
  • Export helpers for LS means tabulation: lsmeans_wide_cfun, lsmeans_wide_first_split_fun_fct, lsmeans_wide_second_split_fun_fct
  • Added lifecycle to suggests