I am trying to provide the specific databases and mmseq script necessary for running msa on an actual mounted drive.
First, it appears that in each output's ./msa/_unpaired_tmp_env folder, there is an msa.sh shell script. Can I adjust this file in a way and incorporate it back into the main Boltz-2 directory so that the search is performed the same way as using the --use-msa-server, but with the directory of the msa databases indicated on the mounted drive? I am unable to tell what the input from Boltz-2 to the mmseqs server exactly is, although I could have easily looked over it on accident.
Second, I see "bfd.mgnify30.metaeuk30.smag30.a3m", "pdb70.m8" and "uniref.a3m" as outputs in the same folder. Is this the latest PDB70 and uniref30? Or is it a different uniref? I assume colabfoldenvdb is what is used for the bfd30.mgnify30.metaeuk30.smag30 output.
I am trying to provide the specific databases and mmseq script necessary for running msa on an actual mounted drive.
First, it appears that in each output's ./msa/_unpaired_tmp_env folder, there is an msa.sh shell script. Can I adjust this file in a way and incorporate it back into the main Boltz-2 directory so that the search is performed the same way as using the --use-msa-server, but with the directory of the msa databases indicated on the mounted drive? I am unable to tell what the input from Boltz-2 to the mmseqs server exactly is, although I could have easily looked over it on accident.
Second, I see "bfd.mgnify30.metaeuk30.smag30.a3m", "pdb70.m8" and "uniref.a3m" as outputs in the same folder. Is this the latest PDB70 and uniref30? Or is it a different uniref? I assume colabfoldenvdb is what is used for the bfd30.mgnify30.metaeuk30.smag30 output.