Library of common scripts used to align mutlitple data types to reference genome assemblies. Create a conda enviroment using the enviroment.yml file to have needed dependancies for scripts

Bismark, bowtie2, dorado, and deepmod2 needs to be installed independently in order for certain scripts to run Links: Bismark https://www.bioinformatics.babraham.ac.uk/projects/bismark/ bowtie2 https://github.com/BenLangmead/bowtie2 dorado https://github.com/nanoporetech/dorado deepmod2 https://github.com/WGLab/DeepMod2