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False "needs checkpoint" obligation after checkpointing — filesModified was never reset after context_checkpoint ran, causing the obligation to re-fire on every subsequent turn even though the state was already saved. Also caused incorrect [auto] No explicit checkpoint log entries at session end after a checkpoint was made.
context_discover permanently suppressed checkpoint obligations — calling context_discover updated lastSeenStateMtime but not stateAtSessionStart, which permanently disabled the "STATE.md needs checkpoint" obligation reminder for the rest of the session regardless of further file changes.
False "STATE.md updated externally" warning after compaction — when the plugin appended its auto-log entry during compaction, it changed STATE.md's mtime without updating lastSeenStateMtime. The next turn incorrectly warned that STATE.md had been edited by an external actor.