- prefix-based log file naming when --output_prefix is present
- Refmacat
- inherit refmac5 exit code
- bug fix: include missing dictionary blocks in mmCIF for long residue names
- bug fix: buffer deadlock on Windows
- No Refmac refinement in general
- place hydrogen at nucleus position for EM
- SPA refinement
- output normalised maps even when mask not provided
- no longer writes _Fstats.log
- fix for too-many chain problem in symmetry expanded models
- Crystallographic refinement
- report FOM values per cycle
- write FWT_nofill to mtz
- use common Ds
- use amplitudes for stats if input is amplitude in twinning
- util geom: --find_links added
- requires gemmi 0.7.5
- included in CCP4 9.0.016
Full Changelog: v0.4.131...v0.4.142