Duplicated segments in segs_consensus for NCI-N87

[teng-gao]

segs_consensus %>% filter(CHROM == 21)

sample	CHROM	seg	cnv_state	cnv_state_post	seg_start	seg_end	seg_start_index	seg_end_index	theta_mle	theta_sigma	phi_mle	phi_sigma	p_loh	p_del	p_amp	p_bamp	p_bdel	LLR	LLR_y	LLR_x	n_genes	n_snps	component	LLR_sample	seg_length	seg_cons	n_states	cnv_states
<int>	<int>	<chr>	<chr>	<chr>	<int>	<int>	<int>	<int>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<dbl>	<int>	<int>	<int>	<dbl>	<int>	<chr>	<int>	<chr>
5	21	21a	del	del	5022554	30803244	132281	132333	0.316459	0.10430900	0.5419273	0.1227646	0.0000000	1.0000000	0.000000e+00	0.000000e+00	0.000000000	7.806392	1.332662	3.657015	19	19	27	4.989677	25780690	21a	1	del
NA	21		neu	neu	31142339	36052402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4910063	21b	0	neu
1	21	21c	del	del	36070024	46635595	132623	132735	0.164132	0.02908492	0.7261135	0.1065095	0.0000000	1.0000000	0.000000e+00	0.000000e+00	0.000000000	6.612843	8.339588	2.380321	45	85	23	10.719909	10565571	21c	1	del
1	21	21c	del	del	36070024	46635595	132623	132735	0.164132	0.02908492	0.7261135	0.1065095	0.1403512	0.8579999	6.860831e-06	1.313015e-08	0.001642026	6.612843	8.339588	2.380321	45	85	23	10.719909	10565571	21d	1	del

Caused by forcing p_del = 1 while excluding segs_loh when part the segment is already called.