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v2.1.4: Fix for sparse outputs, add experimental option for nonzero denom

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@kjamison kjamison released this 12 Apr 05:08
· 30 commits to master since this release

Add experimental option "Only include subjects with non-zero denominator in local ratio". When computing the ratio for a given location or pair, only include subjects for which the denominator in that location (total number of streamlines ending there) is nonzero.

When enabled, it will affect all(chacovol|chacoconn)_(mean|stdev) outputs, but not any _allref outputs. It will also create an additional (chacovol|chacoconn)_denomfrac output, which is the fraction of subjects with a nonzero denominator for that location or pair. This can be applied offline by the user to threshold the chacovol_mean to exclude locations where only a small number of subjects have data. For instance, Vchaco[Vdenomfrac<0.01]=0 would set chaco values to zero for voxels where >=99% of the 420 reference subjects have no streamlines.