feat: establish secure GraphRAG core - #20
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July 23, 2026 07:31
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📝 WalkthroughWalkthroughThe PR adds framework-neutral GraphRAG core and testkit modules, validated extraction and graph contracts, deterministic retrieval and token-budget utilities, authorization-scoped in-memory projection behavior, JUnit coverage, and related Gradle and architecture updates. ChangesGraphRAG foundation
Estimated code review effort: 4 (Complex) | ~60 minutes 🚥 Pre-merge checks | ✅ 4 | ❌ 1❌ Failed checks (1 warning)
✅ Passed checks (4 passed)
✨ Finishing Touches🧪 Generate unit tests (beta)
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Actionable comments posted: 2
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Verify each finding against current code. Fix only still-valid issues, skip the
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Inline comments:
In
`@components/graph-rag-testkit/src/main/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjection.java`:
- Around line 40-78: Remove the redundant collidesAcrossContributionTypes
calculation and its use in the collision guard. Keep
collidesWithAnotherRevision, which already checks replacementIds against both
entityContributions and relationContributions, as the sole condition before
throwing the existing IllegalArgumentException.
In
`@components/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/FrameworkNeutralityTests.java`:
- Around line 10-13: Update
graphCoreAndTestkitDoNotBringSpringOntoTheRuntimeClasspath to enforce the full
no-Spring runtime contract by checking for Spring package availability rooted at
org.springframework, not only org.springframework.context.ApplicationContext.
Preserve the existing ClassNotFoundException assertion behavior while covering
transitive spring-core and spring-beans classes.
🪄 Autofix (Beta)
Fix all unresolved CodeRabbit comments on this PR:
- Push a commit to this branch (recommended)
- Create a new PR with the fixes
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⛔ Files ignored due to path filters (5)
docs/decisions/0005-secure-java-graph-kernel.mdis excluded by!docs/**docs/decisions/0010-internal-retrieval-strategies-one-hop-graph.mdis excluded by!docs/**docs/increments/completed/2026-07-23-secure-graph-rag-core/design.mdis excluded by!docs/**docs/increments/completed/2026-07-23-secure-graph-rag-core/plan.mdis excluded by!docs/**docs/vision.mdis excluded by!docs/**
📒 Files selected for processing (39)
ARCHITECTURE.mdbuild-logic/src/main/kotlin/orgmemory.java-library-conventions.gradle.ktscomponents/graph-rag-core/build.gradle.ktscomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/authorization/AuthorizedGraphScope.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EntityContribution.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EvidenceProvenance.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionProfile.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionRequest.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionResult.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationContribution.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationOrientation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/EntityRelationExtractor.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionReader.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionWriter.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphRevisionContributions.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphSeedIndex.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/ContextTokenUsage.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/DeterministicRanker.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RankedItem.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalChannel.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalPlan.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalStrategy.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RoundRobinInterleaver.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/SecureContextBudget.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/TokenAllocation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/WholeItemBudgetAllocator.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/model/ExtractionResultTests.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/DeterministicRetrievalAlgorithmsTests.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/RetrievalPlanTests.javacomponents/graph-rag-testkit/build.gradle.ktscomponents/graph-rag-testkit/src/main/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjection.javacomponents/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/FrameworkNeutralityTests.javacomponents/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjectionSecurityTests.javagradle/libs.versions.tomlsettings.gradle.kts
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**/*: Before changing unfamiliar Spring Boot 4, Spring Modulith 2, Spring AI 2, Gradle, React, Vite, Tailwind, or TypeScript APIs, consult Context7/current official documentation and the projectorgmemory-*verification skills.
Readdocs/guidelines/agent-safety.mdbefore retrieval, AI, MCP, permission, upload, graph, or export work.
Never commit.envfiles, provider keys, tokens, or customer data.
Run the relevant gates fromdocs/guidelines/testing-harness.md; use a terminating clean test as the context gate, and do not treatbootRunas verification.
Current behavior belongs in architecture/specs only after it exists in code; intent belongs in vision, roadmap, or an active increment, and repository state must not be duplicated across documents.
Files:
components/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/FrameworkNeutralityTests.javasettings.gradle.ktscomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationOrientation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/TokenAllocation.javacomponents/graph-rag-core/build.gradle.ktscomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionWriter.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RankedItem.javabuild-logic/src/main/kotlin/orgmemory.java-library-conventions.gradle.ktscomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationContribution.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphSeedIndex.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/EntityRelationExtractor.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionResult.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalEntity.javacomponents/graph-rag-testkit/build.gradle.ktscomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/ContextTokenUsage.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionProfile.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EntityContribution.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/DeterministicRetrievalAlgorithmsTests.javagradle/libs.versions.tomlcomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/authorization/AuthorizedGraphScope.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/DeterministicRanker.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/SecureContextBudget.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionRequest.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/model/ExtractionResultTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionReader.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphRevisionContributions.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalStrategy.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EvidenceProvenance.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalPlan.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/WholeItemBudgetAllocator.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/RetrievalPlanTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalChannel.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RoundRobinInterleaver.javacomponents/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjectionSecurityTests.javaARCHITECTURE.mdcomponents/graph-rag-testkit/src/main/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjection.java
**/*.{java,sql}
📄 CodeRabbit inference engine (CLAUDE.md)
Pair JPA schema changes with a Flyway migration.
Files:
components/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/FrameworkNeutralityTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationOrientation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/TokenAllocation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionWriter.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RankedItem.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationContribution.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphSeedIndex.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/EntityRelationExtractor.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionResult.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/ContextTokenUsage.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionProfile.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EntityContribution.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/DeterministicRetrievalAlgorithmsTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/authorization/AuthorizedGraphScope.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/DeterministicRanker.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/SecureContextBudget.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionRequest.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/model/ExtractionResultTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionReader.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphRevisionContributions.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalStrategy.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EvidenceProvenance.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalPlan.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/WholeItemBudgetAllocator.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/RetrievalPlanTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalChannel.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RoundRobinInterleaver.javacomponents/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjectionSecurityTests.javacomponents/graph-rag-testkit/src/main/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjection.java
**/*.java
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Files:
components/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/FrameworkNeutralityTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationOrientation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/TokenAllocation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionWriter.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RankedItem.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationContribution.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphSeedIndex.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/EntityRelationExtractor.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionResult.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/ContextTokenUsage.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionProfile.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EntityContribution.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/DeterministicRetrievalAlgorithmsTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/authorization/AuthorizedGraphScope.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/DeterministicRanker.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/SecureContextBudget.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionRequest.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/model/ExtractionResultTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionReader.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphRevisionContributions.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalStrategy.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EvidenceProvenance.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedEntity.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedRelation.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalPlan.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/WholeItemBudgetAllocator.javacomponents/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/RetrievalPlanTests.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalChannel.javacomponents/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RoundRobinInterleaver.javacomponents/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjectionSecurityTests.javacomponents/graph-rag-testkit/src/main/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjection.java
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ARCHITECTURE.md
[grammar] ~149-~149: Ensure spelling is correct
Context: ... exposed as a public request option. Its testkit provides a permission-scoped in-memory ...
(QB_NEW_EN_ORTHOGRAPHY_ERROR_IDS_1)
🔇 Additional comments (38)
ARCHITECTURE.md (1)
4-5: LGTM!Also applies to: 23-27, 143-156
build-logic/src/main/kotlin/orgmemory.java-library-conventions.gradle.kts (1)
1-4: LGTM!components/graph-rag-core/build.gradle.kts (1)
1-9: LGTM!components/graph-rag-testkit/build.gradle.kts (1)
1-11: LGTM!gradle/libs.versions.toml (1)
11-11: LGTM!Also applies to: 24-26
settings.gradle.kts (1)
22-23: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationOrientation.java (1)
1-6: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EvidenceProvenance.java (1)
7-50: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/EntityContribution.java (1)
6-27: LGTM!components/graph-rag-testkit/src/test/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjectionSecurityTests.java (1)
57-116: LGTM!Also applies to: 118-154, 156-228, 230-293
components/graph-rag-core/src/main/java/com/orgmemory/graphrag/authorization/AuthorizedGraphScope.java (1)
1-32: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalEntity.java (1)
1-22: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/CanonicalRelation.java (1)
1-43: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionWriter.java (1)
1-11: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/DeterministicRanker.java (1)
1-27: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalStrategy.java (1)
1-31: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalPlan.java (1)
1-42: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/SecureContextBudget.java (1)
1-40: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RoundRobinInterleaver.java (1)
1-50: LGTM!components/graph-rag-testkit/src/main/java/com/orgmemory/graphrag/testkit/InMemoryGraphProjection.java (1)
86-330: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/RelationContribution.java (1)
7-32: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedEntity.java (1)
5-33: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RankedItem.java (1)
5-16: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/RetrievalChannel.java (1)
3-7: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/TokenAllocation.java (1)
6-13: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/WholeItemBudgetAllocator.java (1)
13-36: LGTM!components/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/DeterministicRetrievalAlgorithmsTests.java (1)
12-55: LGTM!components/graph-rag-core/src/test/java/com/orgmemory/graphrag/query/RetrievalPlanTests.java (1)
11-60: LGTM!components/graph-rag-core/src/test/java/com/orgmemory/graphrag/model/ExtractionResultTests.java (1)
11-68: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractedRelation.java (1)
1-38: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionProfile.java (1)
1-29: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionRequest.java (1)
1-34: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/model/ExtractionResult.java (1)
1-33: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/EntityRelationExtractor.java (1)
1-10: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphProjectionReader.java (1)
1-34: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphRevisionContributions.java (1)
1-61: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/port/GraphSeedIndex.java (1)
1-20: LGTM!components/graph-rag-core/src/main/java/com/orgmemory/graphrag/query/ContextTokenUsage.java (1)
1-14: LGTM!
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What changed
graph-rag-coreand reusablegraph-rag-testkitGradle modulesAuthorizedGraphScopefor every graph read contractWhy
OrgMemory needs a reusable GraphRAG semantic kernel before adding Spring AI or PostgreSQL adapters. The core must keep restricted contributions out of seed ranking, descriptions, adjacency, degree, weight, and citations instead of post-filtering globally merged graph data.
SECURE_MIXremains the default product plan, while trusted internal orchestration can select narrower strategies for evaluation or fallback without exposing LightRAG modes through Assistant or MCP APIs.Validation
./gradlew.bat --no-daemon compileJava./gradlew.bat --no-daemon clean testgit diff --checkmechanical gates passDeliberately deferred
Summary by CodeRabbit