MATLAB and Python code implementing the Debye diffraction integral via the Fourier transform method of Leutenegger et al.. Includes a speed-up over the original, FFT-based approach by calculating upscaled DFTs directly. Also includes some functions for calculating pupil functions based on Foreman et al..
Versions of this code have been used in:
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Quantification of the NA dependent change of shape in the image formation of a z-polarized fluorescent molecule using vectorial diffraction simulations. Florian Ströhl, Ezra Bruggeman, Christopher J. Rowlands, Deanna L. Wolfson & Balpreet S. Ahluwalia. Microscopy Research & Technique (2022).
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Light-sheet microscopy at high resolution. Reto Fiolka. Nature Biotechnology 39, 1345–1346 (2021).
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Real-time multi-angle projection imaging of biological dynamics. Bo-Jui Chang, James D. Manton, Etai Sapoznik, Theresa Pohlkamp, Tamara S. Terrones, Erik S. Welf, Vasanth S. Murali, Philippe Roudot, Kayley Hake, Lachlan Whitehead, Andrew G. York, Kevin M. Dean & Reto Fiolka. Nature Methods 18, 829–834 (2021).
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Answering some questions about structured illumination microscopy. James D. Manton. arXiv 2104.06558 (2021).
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Combining sample expansion and light sheet microscopy for the volumetric imaging of virus-infected cells with super-resolution. Luca Mascheroni, Kahtarina M. Scherer, James D. Manton, Edward Ward, Oliver Dibben & Clemens F. Kaminski. Biomedical Optics Express 11 (9), 5032–5044 (2020).
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Extended depth of focus multiphoton microscopy via incoherent pulse splitting. Bo-Jui Chen, Tonmoy Chakraborty, Stephan Daetwyler, James D. Manton, Kevin M. Dean & Reto Fiolka. Biomedical Optics Express 11 (7), 3830–3842 (2020).
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triSPIM: light sheet microscopy with isotropic super-resolution. James D. Manton & Eric J. Rees. Optics Letters 41 (18), 4170–4173 (2016).
Please let me know if you find it useful and would like your manuscript adding to the list.