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v2.2.0

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@ladislav-hovan ladislav-hovan released this 18 Mar 15:01
· 13 commits to main since this release
v2.2.0
577b1c0

This minor release mainly changes the PPI prior by including self-interactions (diagonal of the PPI matrix) in the priors, which ensures all TFs are present there. The default setting for the PPI prior is now changed to weighted. Tests are greatly improved, and some performance improvements and minor bugfixes were added under the hood.

Highlights:

  • Changes to PPI priors
    • Explicitly include self-interactions
    • Weighted by default
  • Greatly expanded tests, all the classes have their own tests now
  • Some performance improvements for Ensembl retrieval and motif filtering
  • Version of SPONGE can now be queried from the command line
  • Fingerprint file includes SPONGE version now
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