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feat(index): mask data overlay files in scalar and vector index queries#7549

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feat(index): mask data overlay files in scalar and vector index queries#7549
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will/oss-1325-indexes-mask-data-overlay-files-correctly

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@wjones127

@wjones127 wjones127 commented Jul 1, 2026

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Index masking for data overlay files. Builds on the overlay read path (#7536), now merged.

Problem

An index built before an overlay does not reflect the overlay's values, so its entries for overlay-covered cells may be stale. WHERE age = 25 after an overlay sets a row's age to 26 must not return that row from the index; WHERE age = 26 must find it. Queries must stay correct while overlays remain.

Approach

For each index a query relies on, compute which row addresses within each covered fragment carry an overlay committed after the index (committed_version > index.dataset_version) and touching a field the index covers. The check is:

  • field-aware — an overlay touching only non-indexed fields excludes nothing;
  • version-gated — an overlay already incorporated by the index (committed_version <= index.dataset_version) is ignored.

This is the new overlay_exclusion_offsets helper in dataset/overlay.rs.

Such rows are excluded from the index result and re-evaluated against their current (overlay-merged) values:

  • Scalar (BTree) (row-level): stale row addresses are blocked from MaterializeIndexExec output via overlay_block: Option<RowAddrMask>. Only those rows are re-evaluated via a targeted TakeExec + full-filter path. Non-stale rows in the same fragment remain on the indexed path.
  • Vector ANN (row-level): stale row addresses are passed to DatasetPreFilter.overlay_block, blocking them from ANN results. Only those rows are re-scored via a targeted TakeExec + flat-KNN path. Non-stale rows in the same fragment stay in ANN coverage.
  • FTS (fragment-level): FTS segments covering stale fragments are excluded from MatchQueryExec (via new_with_segments). Stale fragments fall to the existing FlatMatchQueryExec path, which reads current overlay-merged values. Fragment granularity is sufficient because flat text matching is row-precise and cheap relative to flat-KNN.

This drops stale index hits and surfaces new matches the index never saw.

Performance

Benchmark: 1M rows, 100k rows/fragment (10 frags), 32-dim vec, NVMe, release build.

Scalar (BTree) — age = <value>

overlays stale_frag_ms clean_frag_ms
0 0.4 0.4
1 0.9 0.6
4 0.5 0.6
16 0.6 0.6

The overhead when overlays exist comes from the stale-check itself (segment metadata load), not from flat-scanning — only stale rows are taken, not the whole fragment.

Vector ANN — fragment 0 with 1 overlaid row

vec_overlays ann_ms notes
0 9.6 no overlays
1 10.4 row 0 blocked, re-scored via targeted take

Previously at fragment-level: 10.0ms → 11.9ms (+1.9ms scanning 100k rows flat).
With row-level: +0.8ms for targeted take of 1 row — overhead is O(stale_rows), not O(fragment_size).

Fast-path summary:

  • No overlays (common case): O(num_fragments) boolean check, zero allocations.
  • Overlays predate the index: per-fragment version gate skips all field/bitmap work.
  • Stale overlays exist: index metadata from cache; overlay_exclusion_offsets called once per covered fragment with overlays.

Tests

dataset::tests::dataset_overlay_index_masking (e2e) and dataset::overlay (unit):

  • BTree: stale-drop and new-match; row-level precision (non-stale row in same fragment returned alongside stale row via Take path)
  • Compound AND expression: both leaf index searches collect stale rows
  • Overlay on an unrelated field excludes nothing
  • Overlay with committed_version <= index.dataset_version not excluded
  • NULL override
  • Multi-fragment
  • Vector index: stale row dropped, overlay-updated row re-scored back into the top-k
  • FTS: stale term not returned; new term found via flat path; overlay on non-FTS field excludes nothing
  • overlay_exclusion_offsets unit tests: version gate, field-awareness, sparse per-field coverage, multi-overlay union

🤖 Generated with Claude Code

Summary by CodeRabbit

  • Bug Fixes
    • Improved query accuracy when data overlays commit changes after indexes are created.
    • Scalar index reads, full-text search, and vector ANN/KNN now mask out stale index hits and re-evaluate only the affected rows/fragments to preserve correct filtering and top-K behavior.
  • Tests
    • Added end-to-end tests for overlay-aware masking across scalar, full-text (including phrase behavior), and vector search, covering version gating, field scoping, and sparse/dense overlay scenarios.

@github-actions github-actions Bot added the enhancement New feature or request label Jul 1, 2026
@wjones127

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Benchmark results — OSS-1325 overlay index masking

All numbers are warm-cache, NVMe local disk, release build (Python benchmarks via pytest-benchmark, Rust benchmark via cargo test --release).


1. BTree — stale row count scaling

Dataset: 1M rows / 10 fragments (100k rows/frag). Query: val < 500000000 (~46% selectivity). Overlay covers 1 commit touching N rows on every fragment.

stale rows/frag mean (ms) overhead
0 (baseline) 27.9
1 28.9 +1.0 ms
10 29.4 +1.5 ms
100 29.9 +2.0 ms
1,000 29.3 +1.4 ms
10,000 (10%) 33.2 +5.3 ms

Row-level masking keeps overhead proportional to stale row count. At 10% stale density (10k stale rows in a 100k-row fragment), overhead is only +5ms on a 1M-row query. The fragment-level approach would have sent 10 × 100k rows to flat scan — orders of magnitude worse.


2. BTree — fragment coverage

Dataset: 1M rows / 10 frags. 1% stale rows per overlaid fragment.

overlaid frags mean (ms) overhead
0 25.4
1 26.0 +0.6 ms
5 28.3 +2.9 ms
10 (all) 30.3 +4.9 ms

~0.5 ms overhead per additionally-overlaid fragment. The fast-path (skip all stale analysis when no fragment has any overlay) is effective — the 0-overlay baseline is indistinguishable from a dataset with no overlay support.


3. BTree — overlay file count (compaction motivation)

Dataset: 100k rows / 1 fragment. Each commit overlays the same 1% of rows, so stale row count stays constant while file count grows.

overlay commits mean (ms) overhead
0 3.8
1 4.7 +0.9 ms
4 5.3 +1.5 ms
16 8.0 +4.2 ms
64 21.6 +17.8 ms

Key finding: overhead scales linearly with overlay commit count because each commit adds a DataOverlayFile entry that must be iterated during stale-row computation. 64 commits → 5.7× slower. This is the strongest argument for overlay compaction — even with the same stale row set, accumulated uncompacted commits degrade query performance.


4. BTree — non-indexed field overhead

Dataset: 100k rows / 1 fragment. BTree on val; overlay on either val (indexed) or id (not indexed).

scenario mean (ms)
no overlay 3.7
overlay on val (indexed) 4.8
overlay on id (not indexed) 5.0

Both overlay scenarios add ~1.1–1.3 ms. The current fast-path fires only when there are no overlays at all; when any overlay exists, we still load BTree segment metadata and iterate overlay field IDs before concluding 0 stale rows. A second fast-path that checks field IDs before loading segments would eliminate this overhead for non-indexed fields. Left as a follow-up optimization.


5. Vector ANN — recall and latency

Dataset: 50k rows / 1 fragment, 32-dim IVF_FLAT (1 partition). 20 query vectors, k=10.

stale % recall@10 mean/query (ms)
0% 1.000 0.99
1% 1.000 0.90

Perfect recall at 1% stale rate (500 blocked rows). No latency regression.

As a point of reference from the Rust-level benchmark:

overlays ANN latency (ms)
0 9.6
1 10.4

+0.8 ms for a single overlay targeting 1 row in a 100k-row fragment (vs. the old fragment-level approach which forced 100k-row flat KNN, adding ~1.9 ms).


6. FTS — stale fragment count

Dataset: ~105k rows / 11 fragments (10k rows/frag), realistic English sentences via lance._datagen. Query: "buffer" (~1.4% frequency → 1,391 matching rows). FTS uses fragment-level masking: any overlay on a text-column row causes the whole FTS segment for that fragment to be excluded, and those rows fall back to flat text scan.

stale frags mean (ms) overhead results
0 3.78 1,391
1 / 11 3.97 +0.19 ms 1,391
5 / 11 4.51 +0.73 ms 1,391
10 / 11 4.77 +0.99 ms 1,391

Result count is identical across all stale-frag counts — correctness is maintained. Even with 10 of 11 fragments stale (essentially pure flat text scan), overhead is under 1 ms. Fragment-level FTS masking is sufficient: the flat text scan on short English sentences is cheap, and a row-level FTS path would save at most ~1 ms in the worst case, not worth the complexity of a new scorer node.


Summary

index type granularity worst-case overhead observed
BTree row-level +5.3 ms at 10% stale density
Vector ANN row-level +0.8 ms per 1-row overlay
FTS fragment-level +1.0 ms at 10/11 frags stale

The main performance risk is overlay file accumulation without compaction (benchmark 3): 64 uncompacted commits cause a 5.7× slowdown even with the same stale row set. Compaction is important for production workloads with frequent updates.

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📒 Files selected for processing (12)
  • rust/lance/benches/mem_wal/point_lookup/mem_wal_point_lookup_bench.rs
  • rust/lance/src/dataset/index.rs
  • rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs
  • rust/lance/src/dataset/overlay.rs
  • rust/lance/src/dataset/scanner.rs
  • rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs
  • rust/lance/src/dataset/tests/mod.rs
  • rust/lance/src/index/prefilter.rs
  • rust/lance/src/index/vector/fixture_test.rs
  • rust/lance/src/io/exec/filtered_read.rs
  • rust/lance/src/io/exec/knn.rs
  • rust/lance/src/io/exec/scalar_index.rs

📝 Walkthrough

Walkthrough

Overlay metadata now identifies stale indexed rows and fragments after later data overlays. Scalar, FTS, and vector scanner paths mask stale index results and re-evaluate affected rows or fragments. Row masks propagate through filtered reads, scalar materialization, ANN prefilters, and KNN rescoring, with unit and end-to-end coverage.

Changes

Overlay index masking

Layer / File(s) Summary
Overlay staleness tracking
rust/lance/src/dataset/overlay.rs
Adds version- and field-aware exclusion bitmaps, stale fragment and row collectors, and unit tests for overlay coverage behavior.
Index execution masking
rust/lance/src/index/prefilter.rs, rust/lance/src/io/exec/filtered_read.rs, rust/lance/src/io/exec/scalar_index.rs, rust/lance/src/io/exec/knn.rs
Adds overlay row masks to prefilters, filtered reads, scalar index materialization, and ANN execution.
Scalar and FTS stale-row routing
rust/lance/src/dataset/scanner.rs
Partitions stale coverage, rechecks stale scalar rows, and routes stale FTS fragments to flat evaluation while restricting indexed execution to fresh segments.
Vector stale-candidate rescoring
rust/lance/src/dataset/scanner.rs
Blocks stale ANN candidates and adds flat KNN rescoring for stale rows before combining results.
Overlay masking validation
rust/lance/src/dataset/tests/*, rust/lance/src/dataset/tests/mod.rs
Adds scalar, FTS, and vector overlay masking tests, including an ignored benchmark.
Async planning stack adjustments
rust/lance/src/dataset/index.rs, rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs, rust/lance/benches/mem_wal/point_lookup/mem_wal_point_lookup_bench.rs
Boxes selected planning and remapping futures before awaiting them.

Estimated code review effort: 4 (Complex) | ~60 minutes

Suggested labels: A-index

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Actionable comments posted: 10

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (2)
rust/lance/src/dataset/scanner.rs (2)

4127-4232: 📐 Maintainability & Code Quality | 🔵 Trivial | 💤 Low value

Combined ANN + fallback + stale rescoring logic looks correct; a few new bare .unwrap() calls.

The overall approach (ensure vector column present, build fallback/stale flat-KNN inputs projected to knn_node's schema, union, re-run flat_knn over the union) correctly generalizes the pre-existing fallback-only combination to also handle stale rows. debug_assert!(q.metric_type.is_some()) is the right call per guidelines.

Two new bare .unwrap()s worth tightening:

  • self.dataset.empty_projection().union_column(&q.column, OnMissing::Error).unwrap() (~4159-4160)
  • self.dataset.schema().project(&columns).unwrap() (~4176)

Both are unlikely to fail in practice (the columns always exist), but per coding guidelines this should propagate via ? instead.

As per coding guidelines, rust/**/*.rs: "Avoid bare .unwrap()... If unavoidable, use .expect(\"reason\")."

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@rust/lance/src/dataset/scanner.rs` around lines 4127 - 4232, Replace the bare
unwraps in the vector projection setup and fallback scan projection within the
surrounding scanner method with error propagation via ?. Preserve the existing
projection construction and pass the resulting projections to take and
scan_fragments, allowing both projection errors to return from the method.

Source: Coding guidelines


2952-3009: 🩺 Stability & Availability | 🔵 Trivial | ⚡ Quick win

Sound design for masking + re-evaluating stale rows on the indexed-scan path.

Computing overlay_stale_rows from the candidate fragments, blocking them via with_overlay_block, and unioning a targeted stale-Take path back in is consistent with the documented design and with FilteredReadOptions's exposed with_overlay_block builder contract.

One nit: let filter = filter_plan.full_expr.as_ref().unwrap(); (line 2992) is a bare .unwrap() on an Option. It's guarded implicitly by filter_plan.index_query.is_some() a few lines up (index_query and full_expr are expected to be set together), but that invariant isn't enforced by the type system here. See the consolidated note on this pattern below.

As per coding guidelines, rust/**/*.rs: "Avoid bare .unwrap(); use if let, match, let ... else, ?, or combinators... If unavoidable, use .expect("reason")."

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@rust/lance/src/dataset/scanner.rs` around lines 2952 - 3009, Replace the bare
unwrap of filter_plan.full_expr in the stale-Take path with explicit handling of
the missing expression, using the surrounding filter-plan flow to return or
propagate an appropriate error before constructing the filtered stale plan.
Preserve the existing behavior when full_expr is present and keep the
index_query guard unchanged.

Source: Coding guidelines

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@rust/lance/src/dataset/overlay.rs`:
- Around line 1169-1252: Move the inline DataFile and DataOverlayFile imports
out of dense_overlay and test_exclusion_offsets_sparse_per_field, since they are
already available through the tests module scope. Keep only the necessary
OverlayCoverage import, placing it at the tests module’s top-level imports.
- Around line 89-155: Extract the shared version gate and overlay exclusion
calculation from collect_stale_overlay_frags and
collect_overlay_stale_rows_for_segment into a helper such as
stale_offsets_for_fragment, returning an empty RoaringBitmap when all overlays
predate segment.dataset_version and otherwise calling overlay_exclusion_offsets.
Update both callers to use this helper while preserving their existing
fragment-level and row-level stale accumulation behavior.
- Around line 89-155: Update collect_stale_overlay_frags and
collect_overlay_stale_rows_for_segment so a missing segment.fragment_bitmap is
treated as covering every fragment, matching DatasetPreFilter::new. Remove the
early return for None and make the coverage check skip only fragments explicitly
absent from Some(bitmap); preserve existing stale-fragment and stale-row masking
behavior for covered fragments.

In `@rust/lance/src/dataset/scanner.rs`:
- Around line 13750-14335: Add overlay masking test coverage using datasets
configured with enable_stable_row_ids: true, especially around
stale_rows_row_id_exec and RowId/RowAddr handling. Update the relevant dataset
builders or add focused scalar/vector/FTS cases while preserving the existing
assertions and ensuring stale rows are correctly excluded without corrupting row
identity.
- Around line 4560-4574: Replace the bare unwraps in the fallback projection
flow around filter_plan.full_expr and fallback_projection with explicit
invariant handling. In the fallback_projection construction, convert a missing
filter_plan.full_expr into an internal Error using the established error
pattern, and in the stale_rows path handle a missing fallback_projection without
panicking, preserving the existing behavior for valid states.
- Around line 4438-4476: Update stale_rows_row_id_exec and its callers so
physical RowAddress values are not emitted as _rowid inputs to TakeExec. Route
stale-row reads through the row-address-aware mechanism used by
u64s_as_take_input, including RowAddrTreeMap/RowAddrMask and FilteredReadExec
index_input, in new_filtered_read, scalar_indexed_scan, and knn_combined.
Preserve targeted stale-row re-evaluation and support datasets with stable row
IDs.
- Around line 4391-4436: The segment classification in
fts_stale_frags_and_fresh_segments must treat fragment_bitmap: None as unsafe.
Update the match so segments without a bitmap are excluded from fresh_segments
and routed through the flat path, or otherwise force the entire query to use the
flat path; preserve the existing handling for bitmap segments that do or do not
overlap stale_frag_ids.
- Line 5240: The exact-index shortcut around partition_frags_by_coverage must
account for stale_rows before returning ScalarIndexExec. Only use the direct
ScalarIndexExec path when stale_rows.is_empty(); otherwise fall back to the
existing filtered-read path, unless ScalarIndexExec already supports propagating
the overlay mask.

In `@rust/lance/src/io/exec/filtered_read.rs`:
- Around line 96-110: Update without_rows to enforce the documented block-list
invariant instead of silently skipping the update when block.block_list()
returns None. Assert that block_list() is present, then apply also_block to both
index_result.upper and index_result.lower; preserve the existing empty
block-list behavior.

In `@rust/lance/src/io/exec/knn.rs`:
- Around line 1109-1133: Replace the new
ANNIvfSubIndexExec::try_new_with_overlay constructor with the standard
constructor followed by a with_overlay_block builder call, passing the existing
optional overlay_block. Update ANNIvfSubIndexExec’s constructor/API accordingly
and adjust both call sites, including the path around new_knn_exec and the
additional occurrence noted by the review, without changing overlay behavior.

---

Outside diff comments:
In `@rust/lance/src/dataset/scanner.rs`:
- Around line 4127-4232: Replace the bare unwraps in the vector projection setup
and fallback scan projection within the surrounding scanner method with error
propagation via ?. Preserve the existing projection construction and pass the
resulting projections to take and scan_fragments, allowing both projection
errors to return from the method.
- Around line 2952-3009: Replace the bare unwrap of filter_plan.full_expr in the
stale-Take path with explicit handling of the missing expression, using the
surrounding filter-plan flow to return or propagate an appropriate error before
constructing the filtered stale plan. Preserve the existing behavior when
full_expr is present and keep the index_query guard unchanged.
🪄 Autofix (Beta)

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  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

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📒 Files selected for processing (7)
  • rust/lance/src/dataset/overlay.rs
  • rust/lance/src/dataset/scanner.rs
  • rust/lance/src/index/prefilter.rs
  • rust/lance/src/index/vector/fixture_test.rs
  • rust/lance/src/io/exec/filtered_read.rs
  • rust/lance/src/io/exec/knn.rs
  • rust/lance/src/io/exec/scalar_index.rs

Comment thread rust/lance/src/dataset/overlay.rs Outdated
Comment thread rust/lance/src/dataset/overlay.rs
Comment thread rust/lance/src/dataset/scanner.rs
Comment thread rust/lance/src/dataset/scanner.rs Outdated
Comment thread rust/lance/src/dataset/scanner.rs
Comment thread rust/lance/src/dataset/scanner.rs Outdated
Comment thread rust/lance/src/dataset/scanner.rs Outdated
Comment thread rust/lance/src/io/exec/filtered_read.rs
Comment thread rust/lance/src/io/exec/knn.rs Outdated
Comment thread rust/lance/src/dataset/scanner.rs Outdated
Comment thread rust/lance/src/io/exec/knn.rs Outdated
Comment thread rust/lance/src/io/exec/knn.rs
Base automatically changed from will/oss-1324-take-can-read-overlays to main July 15, 2026 17:35
wjones127 and others added 12 commits July 15, 2026 14:53
A scalar or vector index built before an overlay does not reflect the
overlay's values, so its entries for overlay-covered cells may be stale.
Queries must stay correct while overlays remain.

For each index a query relies on, compute the set of fragments carrying an
overlay that was committed after the index (`committed_version >
index.dataset_version`) and that touches a field the index covers. The check
is field-aware (an overlay on an unrelated field excludes nothing) and
version-gated (an overlay already incorporated by the index is ignored), via
the new `overlay_exclusion_offsets` helper.

Such fragments are dropped from the index's covered set so they fall to the
flat path, which re-evaluates them against their current (overlay-merged)
values:

- Scalar (`FilteredReadExec`): stale fragments are removed from the
  `EvaluatedIndex` covered set, so the full filter is re-applied to them.
- Vector: stale fragments are removed from the index segments' coverage
  bitmaps (so the ANN prefilter blocks their stale rows) and added to the
  flat-KNN fallback so their current vectors are re-scored into the top-k.

This drops stale index hits and surfaces new matches the index never saw.
Granularity is per fragment; row-level exclusion is a future optimization.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Two optimizations to reduce per-query overhead of the overlay-stale-index
check:

1. `mask_overlay_stale_segments` now returns `Option<Vec<IndexMetadata>>`
   instead of always cloning the segment list. `None` means "use the
   original slice unchanged" — no allocation on the fast path (no overlays
   anywhere or no stale fragments found). Only the path that actually
   filters stale rows from coverage bitmaps clones the segments.

2. `collect_stale_overlay_frags` adds a cheap version pre-check before
   calling `overlay_exclusion_offsets`: if every overlay on a fragment
   predates the index (`committed_version <= segment.dataset_version`),
   the fragment is skipped without loading any coverage bitmaps.

Also adds an `#[ignore]` benchmark (`bench_index_query_overlay_overhead`)
covering BTree, FTS, and vector ANN queries at 0/4/16 overlay layers so
the overhead can be measured directly.

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
Address understandability gaps flagged in self-review:

- `overlay_stale_index_frags`: explain that `ScalarIndexExpr` has no
  built-in visitor (motivating the manual stack traversal), and note that
  `load_named_scalar_segments` hits the cached index manifest so the
  per-leaf cost is bounded.

- `partition_frags_by_coverage`: explain why stale fragments do not need
  to be threaded downstream as in the vector path — the scalar flat path
  already handles them via `missing_frags`, making explicit re-scoring
  unnecessary.

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
Two additions from polish-pr self-review:

1. `test_overlay_stale_with_compound_index_expression`: exercises the
   ScalarIndexExpr tree-walk in `overlay_stale_index_frags` with an AND
   predicate over two independently-indexed columns (age AND id). Closes
   the coverage gap where no e2e test covered multi-leaf index expressions.

2. `TODO` comment in the `fts` method noting that FTS does not
   yet mask overlay files — a stale FTS index entry for an overlaid text
   field would survive until compaction. This is out of scope here
   but documents the known gap and records what the fix would require.

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
Replace the 1,500-row in-memory benchmark with a realistic 1M-row
disk-based harness (10 fragments × 100k rows, 32-dim vectors).

Two scenarios that exercise the actual correctness overhead:

Scenario A (BTree): overlay on `age` (the indexed field). Fragment 0 falls
to a 100k-row flat scan instead of an O(log n) index lookup. Measures
`cold_frag0_ms` (stale fragment) vs `warm_frag1_ms` (index-served) at 0/1/4/16
overlay layers to isolate flat-scan cost from index-lookup baseline.

Scenario B (Vector ANN): overlay on `vec` (the indexed field). The
field-aware check confirms the BTree age overlays leave the vector index
clean. One vec overlay on fragment 0 forces brute-force KNN across all
100k rows of that fragment (O(100k × 32) extra distance computations).
Measures `ann_ms` at 0 vs 1 vec overlay.

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
… stores

commit_overlay wrote overlay files via Path::from("data/{name}"). For file://
stores, to_local_path() just prepends '/', making this resolve to /data/{name}
(root filesystem, Permission Denied). For memory:// stores it happened to work
because that branch doesn't call to_local_path at all.

Fix: use dataset.base.clone().join("data").join(filename) so that for file://
stores the path includes the dataset's base directory components, which when
prepended with '/' give the correct absolute path. For memory:// stores base
is the empty path, so join("data").join(name) produces the same string as before.

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
Previously, when any row in a fragment had a stale vector overlay, the
entire fragment (up to 100k rows) was removed from ANN index coverage
and re-scored on the flat path — adding ~1.9ms overhead per stale
fragment in benchmarks.

This changes the vector ANN path to row-level precision:
- Stale row addresses are computed per-fragment (not whole-fragment)
- A RowAddrMask::BlockList for stale rows is passed to
  DatasetPreFilter.overlay_block, blocking them from ANN results
  via the existing prefilter mechanism
- Only the specific stale row addresses are re-scored via a targeted
  TakeExec + flat KNN path, not the whole fragment
- Non-stale rows in the same fragment remain in ANN coverage

For a fragment with 100k rows and 1 stale row, overhead drops from
O(100k) flat KNN to O(1) targeted take.

New infrastructure:
- DatasetPreFilter::with_overlay_block for synchronous row-level blocks
- ANNIvfSubIndexExec stores and applies overlay_block at execute time
- new_knn_exec accepts Option<RowAddrMask> for overlay blocking
- collect_overlay_stale_rows_for_segment: per-row stale computation
- Scanner::mask_overlay_stale_rows: replaces mask_overlay_stale_segments

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
FTS queries could return stale hits when an overlay committed after the index
build covers a fragment the FTS index also covers. The inverted index entries
for those rows still reflect the pre-overlay values.

Fix: in `plan_match_query`, compute which FTS segments touch stale fragments
(overlay committed_version > segment.dataset_version on the indexed column)
via `fts_stale_frags_and_fresh_segments`. Those segments are excluded from
`MatchQueryExec` (using `new_with_segments` with the fresh subset) and all
fragments they covered fall to the flat `FlatMatchQueryExec` path, which
reads current overlay-merged values. The fast path (no overlays) is O(n
fragments) with no segment loading.

Adds two tests in overlay_index_masking:
- test_fts_overlay_stale_drop_and_new_match: stale term no longer returned,
  new term found via flat path
- test_fts_overlay_unrelated_field_not_excluded: overlay on a non-FTS field
  does not affect FTS coverage

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
Previously, any stale overlay on a fragment caused the entire fragment to
fall to the flat scan path (missing_frags), scanning up to 100k rows to
re-evaluate the predicate for a single stale row.

Now the BTree path matches the vector ANN approach:

- partition_frags_by_coverage replaces the fragment-level
  overlay_stale_index_frags with overlay_stale_index_rows (row-level).
  Stale-but-indexed fragments stay in relevant_frags; only their per-row
  stale offsets are returned as a HashMap<u32, RoaringBitmap>.

- MaterializeIndexExec gains overlay_block: Option<RowAddrMask> +
  with_overlay_block builder. The block mask is ANDed into the candidate
  mask before row_ids_for_mask, so stale index entries never reach
  downstream operators.

- scalar_indexed_scan builds the block list from the stale row map and
  applies it to MaterializeIndexExec. A new stale-Take union path
  (OneShotExec(stale_row_ids) -> TakeExec -> LanceFilterExec(full_filter)
  -> project) re-evaluates only the stale rows against their current
  overlay-merged values and unions with the indexed path.

Non-stale rows in a fragment with a stale overlay remain on the indexed
path; only the specific stale rows pay the take cost.

Adds test_btree_overlay_row_level_precision: overlays one row in a
fragment so that two rows in the same fragment share the queried value.
Verifies the non-stale row is returned (from the index) alongside the
stale row (from the Take path).

Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
…, cleanups

Addresses review of the overlay index-masking work.

- Scalar (V2 FilteredReadExec): previously the default v2 path computed per-row
  stale offsets, then collapsed them to fragment ids and dropped whole fragments
  to the flat path — only the legacy v1 scalar_indexed_scan path was row-level,
  and v1 cannot carry overlays. Block just the stale rows from the index result
  (via EvaluatedIndex::without_rows / FilteredReadOptions::overlay_block) and
  re-evaluate them with a targeted Take + full-filter path unioned with the
  indexed read, so v2 scalar masking is O(stale_rows), not O(fragment_size).

- FTS phrase queries: plan_phrase_query loaded all segments unmasked, so a stale
  overlay could return stale phrase hits. Exclude segments covering stale
  fragments. Phrase has no flat re-evaluation path, so — like unindexed
  fragments, which phrase already does not search — overlaid fragments are
  dropped from the phrase result (matches surface after compaction); when every
  segment is excluded the query returns empty rather than erroring. Correct the
  stale fts() TODO that claimed FTS was unmasked.

- Perf: stale-collection now iterates the (rare) overlaid fragments and probes
  segment coverage, O(overlaid_frags) instead of O(indexed_frags); the vector
  helper is scoped to the query's target fragments.

- Cleanups: extract shared stale-rows block-mask and row-id-exec helpers (used by
  the scalar, vector, and v2 paths), encode row addresses via
  RowAddress::new_from_parts, relocate the collect_* helpers next to
  overlay_exclusion_offsets in dataset::overlay, rename mask_overlay_stale_rows
  -> overlay_stale_vector_rows, import HashMap, use RoaringBitmap over
  HashSet<u32>, and fix doc drift referencing overlay_stale_index_frags.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
scanner.rs had grown past 14.5k lines. Relocate the self-contained
overlay_index_masking test module (~1000 lines) into the established
dataset/tests/ directory as dataset_overlay_index_masking.rs. The tests
use only crate-public APIs, so no visibility changes were needed.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Index results are in the row-id domain, and a physical row address equals its
row id only when the dataset does not use stable row ids. The overlay stale-row
masking expressed rows as physical addresses everywhere, so under stable row ids
the block never matched the index results (stale hits leaked) and the re-scored
rows were read wrong. Translate the stale addresses to the row-id domain (via
translate_addr_treemap_to_row_ids) at every masking point: the scalar V2 take
(FilteredReadExec), the scalar V1 block (MaterializeIndexExec), and the vector
ANN prefilter (DatasetPreFilter). Parametrized scalar and vector tests over
enable_stable_row_ids, overlaying a non-first fragment where address != row id.

Also addresses PR review:
- Use an address allow list (not a `_rowid` OneShotExec + TakeExec) to identify
  the stale re-eval rows; `_rowid` is a logical id under stable row ids, so the
  old path took the wrong rows. Consolidated into `stale_rows_take`.
- Treat a missing `fragment_bitmap` as covering all fragments in the overlay
  collect helpers and in FTS segment classification, matching DatasetPreFilter,
  so stale rows can't slip through unmasked on legacy bitmap-less indices.
- Gate the exact-index prefilter shortcut on there being no stale rows, so a
  stale selection vector can't reach ANN/FTS.
- Replace ANNIvfSubIndexExec::try_new_with_overlay with a with_overlay_block
  builder.
- Extract the shared version-gate + exclusion-offsets helper in overlay.rs.
- Replace bare unwraps with `?`/expect_ok, debug_assert the block-list invariant
  in without_rows, and move test-only imports to the tests module.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
wjones127 and others added 2 commits July 15, 2026 14:53
Add regression coverage for overlay index masking under fast_search and for
the legacy missing-fragment_bitmap branch:

- test_btree_overlay_masked_under_fast_search: the scalar drop-stale block and
  stale-Take re-eval both run regardless of fast_search.
- test_vector_overlay_stale_dropped_under_fast_search: the ANN prefilter block
  drops the stale hit under fast_search while the flat re-score is skipped
  (recall tradeoff); guards against moving overlay_block inside the !fast_search
  guard.
- test_collect_frags_missing_bitmap_covers_all / _rows: a None fragment_bitmap
  (index predating bitmap tracking) is treated as covering every fragment.

Self-review cleanups:
- Move the misplaced doc block onto collect_overlay_stale_frags (renamed from
  collect_stale_overlay_frags for consistency with the row-level collector);
  the private helper keeps its // comment.
- Restore the "can't pushdown limit/offset" and "re-ordering anyways" comments
  dropped during the knn_combined rewrite.

Extract create_vector_overlay_dataset/vector_query_ids helpers (shared with
test_vector_index_rescore_on_overlay) and an ids_matching_opts fast_search variant.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Overlay-aware index masking adds fields to widely-shared read-path types
(e.g. DatasetPreFilter, ANNIvfSubIndexExec), which pushes the layout depth of
several scan/take futures past rustc's default query-recursion limit (128) on
1.97. Raise the limit to 256 in the lance lib and in the one bench crate
(mem_wal_point_lookup_bench) that exercises the deepened path.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
@wjones127
wjones127 force-pushed the will/oss-1325-indexes-mask-data-overlay-files-correctly branch from 854d400 to 031f086 Compare July 15, 2026 22:32
Self-review pass to reduce diff size without changing behavior:

- Tests: merge the two FTS id-collecting helpers into one `fts_ids(query)` with
  thin term/phrase delegators, and extract `ids_from_batches` (the id-column ->
  Vec<i32> pattern was copied in 4 helpers). Hoist repeated in-fn `use` imports
  (StringArray, InvertedIndexParams, MetricType, VectorIndexParams, TryStreamExt)
  to the module top and drop a redundant IndexType re-import.
- scanner: extract `overlaid_fragments` (the overlaid-fragment map was built 3x)
  and `stale_rows_in_id_domain` (shared tree-build + stable-row-id translation
  between the block-mask and take paths), consolidating the address-vs-rowid
  rationale into one place.
- Trim the doc comments on the `with_overlay_block` setters to point at the field
  doc instead of repeating it, and shorten the `new_knn_exec` doc.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Comment on lines +30 to +32
// Overlay-aware index masking deepens the scan/take future graph past rustc's
// default query-recursion limit (128); raise it so run_lookup's layout resolves.
#![recursion_limit = "256"]

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suggestion: perhaps we should box some futures to avoid this instead. It will likely create other issues downstream if we don't.

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Done — replaced the recursion_limit bumps with Box::pin on the two futures that actually overflowed. I removed the attributes, recompiled to find the exact overflow points (remap_indices in the lib, run_lookup here), and boxed those two calls (remap_index and plan_lookup). Both have a short comment so they don't get "simplified" away.

.unwrap();
let write_params = WriteParams {
max_rows_per_file: 6,
max_rows_per_group: 6,

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nitpick: groups don't exist past Lance 1.0 so we shouldn't bother setting this.

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Removed max_rows_per_group here and from the other three test datasets.

Comment on lines +42 to +44
/// Like [`create_base_dataset`] but lets a test enable stable row ids, under which `_rowid` is a
/// logical id resolved through a separate mapping (not a physical row address). This exercises the
/// address-based stale-row take path.

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nitpick: unnecessary comment.

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Removed.

…st nits

Address review feedback:

- Replace the `#![recursion_limit = "256"]` attributes (lance lib + the point-
  lookup bench) with `Box::pin` on the two deep futures that overlay-aware index
  masking tipped past rustc's default limit: the `remap_index` call in
  `remap_indices` and the bench's `plan_lookup`. Boxing caps the future's layout
  depth locally rather than papering over it crate-wide.
- Drop `max_rows_per_group` from the test datasets — row groups don't exist past
  Lance 1.0.
- Remove an unnecessary comment on `create_base_dataset_with`.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
@wjones127
wjones127 force-pushed the will/oss-1325-indexes-mask-data-overlay-files-correctly branch 2 times, most recently from eb7e7cb to 8a05c45 Compare July 16, 2026 00:22
…limit overflow

Overlay-aware index masking deepens create_plan's async layout. Two inline
callers push it past rustc's default recursion limit ("queries overflow the
depth limit!"), surfacing in coverage-instrumented CI builds:
- Scanner::explain_plan (fm_contains_bench)
- the mem_wal point-lookup scan builder (mem_wal_point_lookup_bench)

Box the future at each site, the same way try_into_stream and count_rows
already box their plan futures. Boxing per-site (rather than inside create_plan)
keeps create_plan's future type unchanged, avoiding an E0275 Send-bound
trait-solver overflow that centralized boxing triggered in downstream crates.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
@wjones127
wjones127 force-pushed the will/oss-1325-indexes-mask-data-overlay-files-correctly branch from 8a05c45 to 5c49fd7 Compare July 16, 2026 00:36
@wjones127
wjones127 marked this pull request as ready for review July 16, 2026 01:27
@wjones127
wjones127 requested a review from westonpace July 16, 2026 01:27

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Actionable comments posted: 4

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs`:
- Around line 138-148: Expand the rustdoc for the public builder methods
with_session and with_store_params to include compiling # Examples sections
using their current signatures, and add links to the related planner, Session,
and ObjectStoreParams APIs. Keep the examples focused on constructing the
builder and chaining each method, synchronized with the available types and
methods.

In `@rust/lance/src/dataset/overlay.rs`:
- Around line 53-68: Document the public overlay API functions in this module
with compiling doctest examples that match their current signatures. Add links
to relevant types and methods, including DataOverlayFile, Fragment, and
IndexMetadata, and cover the functions around overlay_exclusion_offsets through
the additionally referenced range. Keep examples minimal, valid, and
synchronized with the actual APIs.

In `@rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs`:
- Around line 556-591: The compound-index test currently uses identical
full-fragment coverage and does not exercise partial per-index coverage. Extend
test_overlay_stale_with_compound_index_expression by creating an append between
building the age and id indexes, then apply an overlay and query with a compound
AND filter that uses both indexed columns. Assert each matching row appears
exactly once, covering the path where one leaf uses new_data_path and the other
uses stale_take_path.

In `@rust/lance/src/index/prefilter.rs`:
- Around line 234-239: Use a block-list-specific representation for overlay
exclusions instead of accepting arbitrary RowAddrMask values. In
rust/lance/src/index/prefilter.rs:234-239, update Prefilter's with_overlay_block
to accept or validate RowAddrTreeMap, and at 398-400 combine only the validated
block mask. In rust/lance/src/io/exec/filtered_read.rs:100-109, remove the
release-mode silent no-op; at 1482-1487 store the block-list representation; at
1524-1529 validate the builder argument; and at 1906-1910 propagate validation
errors when applying the exclusion.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro Plus

Run ID: 9a957d04-36cc-4e27-8074-504e311a7ab3

📥 Commits

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📒 Files selected for processing (12)
  • rust/lance/benches/mem_wal/point_lookup/mem_wal_point_lookup_bench.rs
  • rust/lance/src/dataset/index.rs
  • rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs
  • rust/lance/src/dataset/overlay.rs
  • rust/lance/src/dataset/scanner.rs
  • rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs
  • rust/lance/src/dataset/tests/mod.rs
  • rust/lance/src/index/prefilter.rs
  • rust/lance/src/index/vector/fixture_test.rs
  • rust/lance/src/io/exec/filtered_read.rs
  • rust/lance/src/io/exec/knn.rs
  • rust/lance/src/io/exec/scalar_index.rs

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Caution

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Actionable comments posted: 4

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs`:
- Around line 138-148: Expand the rustdoc for the public builder methods
with_session and with_store_params to include compiling # Examples sections
using their current signatures, and add links to the related planner, Session,
and ObjectStoreParams APIs. Keep the examples focused on constructing the
builder and chaining each method, synchronized with the available types and
methods.

In `@rust/lance/src/dataset/overlay.rs`:
- Around line 53-68: Document the public overlay API functions in this module
with compiling doctest examples that match their current signatures. Add links
to relevant types and methods, including DataOverlayFile, Fragment, and
IndexMetadata, and cover the functions around overlay_exclusion_offsets through
the additionally referenced range. Keep examples minimal, valid, and
synchronized with the actual APIs.

In `@rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs`:
- Around line 556-591: The compound-index test currently uses identical
full-fragment coverage and does not exercise partial per-index coverage. Extend
test_overlay_stale_with_compound_index_expression by creating an append between
building the age and id indexes, then apply an overlay and query with a compound
AND filter that uses both indexed columns. Assert each matching row appears
exactly once, covering the path where one leaf uses new_data_path and the other
uses stale_take_path.

In `@rust/lance/src/index/prefilter.rs`:
- Around line 234-239: Use a block-list-specific representation for overlay
exclusions instead of accepting arbitrary RowAddrMask values. In
rust/lance/src/index/prefilter.rs:234-239, update Prefilter's with_overlay_block
to accept or validate RowAddrTreeMap, and at 398-400 combine only the validated
block mask. In rust/lance/src/io/exec/filtered_read.rs:100-109, remove the
release-mode silent no-op; at 1482-1487 store the block-list representation; at
1524-1529 validate the builder argument; and at 1906-1910 propagate validation
errors when applying the exclusion.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro Plus

Run ID: 9a957d04-36cc-4e27-8074-504e311a7ab3

📥 Commits

Reviewing files that changed from the base of the PR and between 28b6ce5 and 5c49fd7.

📒 Files selected for processing (12)
  • rust/lance/benches/mem_wal/point_lookup/mem_wal_point_lookup_bench.rs
  • rust/lance/src/dataset/index.rs
  • rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs
  • rust/lance/src/dataset/overlay.rs
  • rust/lance/src/dataset/scanner.rs
  • rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs
  • rust/lance/src/dataset/tests/mod.rs
  • rust/lance/src/index/prefilter.rs
  • rust/lance/src/index/vector/fixture_test.rs
  • rust/lance/src/io/exec/filtered_read.rs
  • rust/lance/src/io/exec/knn.rs
  • rust/lance/src/io/exec/scalar_index.rs
🛑 Comments failed to post (4)
rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs (1)

138-148: 📐 Maintainability & Code Quality | 🔵 Trivial | ⚡ Quick win

Document the new public builder methods with examples and links.

Add compiling # Examples sections and links to the related planner, session, and store-parameter APIs, keeping examples synchronized with the current signatures.

As per coding guidelines, Rust public APIs must be documented with examples and links to relevant structs and methods.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@rust/lance/src/dataset/mem_wal/scanner/point_lookup.rs` around lines 138 -
148, Expand the rustdoc for the public builder methods with_session and
with_store_params to include compiling # Examples sections using their current
signatures, and add links to the related planner, Session, and ObjectStoreParams
APIs. Keep the examples focused on constructing the builder and chaining each
method, synchronized with the available types and methods.

Source: Coding guidelines

rust/lance/src/dataset/overlay.rs (1)

53-68: 📐 Maintainability & Code Quality | 🟠 Major | ⚡ Quick win

Add compiling examples to the new public APIs.

These functions have semantic documentation but no usage examples. Include doctests and links to relevant types such as [DataOverlayFile], [Fragment], and [IndexMetadata].

As per coding guidelines, “Document all public APIs with examples and links to relevant structs and methods; keep examples synchronized with actual signatures.” <coding_guidelines>

Also applies to: 108-168

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@rust/lance/src/dataset/overlay.rs` around lines 53 - 68, Document the public
overlay API functions in this module with compiling doctest examples that match
their current signatures. Add links to relevant types and methods, including
DataOverlayFile, Fragment, and IndexMetadata, and cover the functions around
overlay_exclusion_offsets through the additionally referenced range. Keep
examples minimal, valid, and synchronized with the actual APIs.

Source: Coding guidelines

rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs (1)

556-591: 🗄️ Data Integrity & Integration | 🔵 Trivial | 🏗️ Heavy lift

Consider extending this compound-index test with differing per-index fragment coverage.

This test builds age and id indices that both cover the full fragment set, so it can't catch the partial-coverage duplicate-row scenario flagged on partition_frags_by_coverage in scanner.rs (a fragment covered by only one of two compound-expression leaves, with an overlay on that leaf's column, could be emitted once via new_data_path and once via stale_take_path). Worth adding a case where one index is built before an append and the other after, then querying with a compound AND filter.

🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@rust/lance/src/dataset/tests/dataset_overlay_index_masking.rs` around lines
556 - 591, The compound-index test currently uses identical full-fragment
coverage and does not exercise partial per-index coverage. Extend
test_overlay_stale_with_compound_index_expression by creating an append between
building the age and id indexes, then apply an overlay and query with a compound
AND filter that uses both indexed columns. Assert each matching row appears
exactly once, covering the path where one leaf uses new_data_path and the other
uses stale_take_path.
rust/lance/src/index/prefilter.rs (1)

234-239: 🎯 Functional Correctness | 🟠 Major | 🏗️ Heavy lift

Use a block-list-specific type for overlay exclusions.

Both APIs accept arbitrary RowAddrMask values despite requiring block lists, producing inverted or silently skipped filtering for allow-list inputs.

  • rust/lance/src/index/prefilter.rs#L234-L239: accept RowAddrTreeMap or reject non-block masks.
  • rust/lance/src/index/prefilter.rs#L398-L400: combine only a validated block mask.
  • rust/lance/src/io/exec/filtered_read.rs#L100-L109: remove the release-mode silent no-op.
  • rust/lance/src/io/exec/filtered_read.rs#L1482-L1487: store a block-list-specific representation.
  • rust/lance/src/io/exec/filtered_read.rs#L1524-L1529: validate the builder argument.
  • rust/lance/src/io/exec/filtered_read.rs#L1906-L1910: propagate validation errors while applying the exclusion.
📍 Affects 2 files
  • rust/lance/src/index/prefilter.rs#L234-L239 (this comment)
  • rust/lance/src/index/prefilter.rs#L398-L400
  • rust/lance/src/io/exec/filtered_read.rs#L100-L109
  • rust/lance/src/io/exec/filtered_read.rs#L1482-L1487
  • rust/lance/src/io/exec/filtered_read.rs#L1524-L1529
  • rust/lance/src/io/exec/filtered_read.rs#L1906-L1910
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@rust/lance/src/index/prefilter.rs` around lines 234 - 239, Use a
block-list-specific representation for overlay exclusions instead of accepting
arbitrary RowAddrMask values. In rust/lance/src/index/prefilter.rs:234-239,
update Prefilter's with_overlay_block to accept or validate RowAddrTreeMap, and
at 398-400 combine only the validated block mask. In
rust/lance/src/io/exec/filtered_read.rs:100-109, remove the release-mode silent
no-op; at 1482-1487 store the block-list representation; at 1524-1529 validate
the builder argument; and at 1906-1910 propagate validation errors when applying
the exclusion.

Source: Coding guidelines

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This looks like a solid improvement for overlay management! 👍🤓
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