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v1.0.0

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@benpruitt benpruitt released this 11 Feb 16:38
614f627
  • Migrated primer3 source to 2.6.1 version, which adds new arguments for melting temperature code
  • Intergrated all Python C-API related code into thermoanalysis.pyx/pxd
  • Deprecated camelCase related functions and added snake_case functions / methods in bindings.py and thermoanalysis.pyx
  • Migrated primer3/wrappers.py to tests/wrappers.py to indicate it should not be used.
  • Expanded test coverage and now using pytest for testing
  • Added pre-commit hooks
  • Call signature update and pattern update: designPrimers now design_primers integrates setting of sequence arguments and global arguments as they are coupled in primer3_boulder_main.c
  • primer3 C code bug fixes to improve compiler warnings
  • Using primer3 read_boulder_record to setup primer3 data structures instead of reproducing code in primer3-py C or Cython via a code signature update
  • drawDimer and drawHairpin updates to unify sequence structure output for testing
  • Integrated GitHub Actions for CI testing
  • Updated sphinx documentation
  • Begin process of making primer3-py code thread-safe
  • Documentation migrated to MyST Markdown
  • Autobuild GitHub action for PyPI wheels and dist tar.gz on version tag
  • Autobuild GitHub action sphinx documentation updates on version tag