v2.1.0: Release version 2.1.0

Features:

• Added a pipeline to combine PLM+IFOLD scoring with ILP library optimization
• More informative logger information (use warnings)
• Biopython utils to extract sequence from PDB and convert CIF to PDB
• Explicit naming of format and validate utility functions

v2.0.0: Release version 2.0.0

Release 2.0.0.

• Move to Python >=3.10
• Add Inverse Folding scoring using ProteinMPNN
• Add more description in README

v1.2.3: Release version 1.2.3.

 Features:
 - Remove old scripts.
 - Clean up README.md
 - Zenodo release.

v1.2.2: Release version 1.2.2.

• Bug fix in plm scorer.

v1.2.1: Release version 1.2.1.

Features:

• Minor changes in the README.md file.

v1.2.0: Release version 1.2.0

Features:

• Added scorer module.
• Added PLM scorer.
• Added a script to compute PLM scores.
• Update the README file with more examples and end-to-end design example.

v1.1.0: Release version 1.1.0

Release version 1.1.0.

Features:

• Add CI workflows for linting and testing.
• Extend documentation in README.md.
• Fix type on math display.

Initial release version 1.0.0

Initial release version 1.0.0.

Features:

• Implements the core functionality described in the paper.
• Includes well-tested modules and components.
• Provides complete documentation for installation and usage.
• Ready for production deployment.