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v0.1.0-alpha.1

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@logannye logannye released this 23 Jun 02:48
v0.1.0-alpha.1
a528d92

HCP-DP v0.1.0-alpha.1

First alpha binary release for hcp-align.

Included

  • Exact score or distance plus exact reconstructed traceback for global linear alignment, global affine alignment, Smith-Waterman local alignment, edit distance, and semi-global linear alignment.
  • Multi-record FASTA/FASTQ pairwise batch input.
  • Text, JSON, JSONL, TSV, and CIGAR-oriented output.
  • Independent path scoring for every run, plus bounded full-table verification with --verify.
  • Release report artifact with correctness and performance probes, plus external validation against Parasail and Edlib where available.

Install

Download the artifact for your platform, verify the SHA-256 checksum, extract it, and run:

hcp-align --help

Alpha Caveats

  • This is a GitHub alpha release only; the crate is not published to crates.io yet.
  • Performance claims remain conservative and should be read alongside the attached report artifact.
  • Batch mode is pairwise zip only.
  • Protein substitution matrices, SAM/BAM/PAF output, and wrapped FASTQ are not supported yet.
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