Version 0.11.0

0.11.0 (08-11-24)

• fix pl.embedding.plot_pca_variance() does not select all PCs using thr 100% (#309)
• feature_per_group remove empty axis (#312)
• fix get_rank_genes_tables return less than n_genes for filtered ranking
• fix _search_dim_red_parameters "ValueError: 'left' is not a valid value for loc"
• fix gseapy, louvain install outside of the docker image (#310)
• implemented plotting.embedding.agg_feature_embedding
• cleanup installation/ dependencies
• CI: Revert to installing mampok from main
• implement bgcolor cell-selection
• update readme
• add a bar plot to predict_cell_cycle (#301)

Changes to notebooks

• add agg_feature_embedding to the group_marker notebook
• fix RNA:02 zebrafish gender suggestion (#311)
• revise 03_normalization_batch_correction notebook
• prepare_for_cellxgene: Add auth parameter
• use the bgcolor cell-selection in all notebooks