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Version 0.12.0

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@rwiegan rwiegan released this 19 Dec 09:50
· 1776 commits to main since this release

0.12.0 (19-12-24)

  • add contrasts parameter to tools.marker_genes.run_deseq2
  • tools.marker_genes.pairwise_rank_genes check minimum amount of groups

Changes to notebooks

  • General: group_marker: set n_genes as top_n for get_rank_genes_tables
  • ATAC 01 assembly: fix error when selecting the path_mtx (3rd) option (#326)
  • General: prepare_for_cellxgene: set required mampok version to 3.0.5