v5.7.0

update genome list; stable efetching (#49)

* Add genomes (#45)

* Corynebacterium diphtheriae

* added Bifidobacterium adolenscentis

* replaced S. enterica IIIa; Added hops (Humulus lupulus)

* added a Citrobacter species

* m

* replaced repressed genome accession for B. faecium

* Esearch input (#47)

* Add genomes (#45) (#46)

* Corynebacterium diphtheriae

* added Bifidobacterium adolenscentis

* replaced S. enterica IIIa; Added hops (Humulus lupulus)

* added a Citrobacter species

* m

* replaced repressed genome accession for B. faecium

* remove random single quotes

* bump version

* helpful log messages

* v5.6.3

* make symlink to avoid naming mistakes

* check whether taxonkit is loaded

* use efetch -input

* fix tr bug

* Esearch input flag (#48)

* Add genomes (#45) (#46)

* Corynebacterium diphtheriae

* added Bifidobacterium adolenscentis

* replaced S. enterica IIIa; Added hops (Humulus lupulus)

* added a Citrobacter species

* m

* replaced repressed genome accession for B. faecium

* remove random single quotes

* bump version

* helpful log messages

* v5.6.3

* make symlink to avoid naming mistakes

* check whether taxonkit is loaded

* use efetch -input

* fix tr bug

* get latest edirect

* update installation instructions

* update installation instructions: fix PATH

* bring in other tests

* update installation method for search with unit-testing

* update installation method for search with kraken2

* debug the ls statement

* debug the ls statement

* debug the ls statement

* debug building taxonomy

* exclusive unit testing for taxonomy for right now

* install taxonkit