Database backend with global subexpression sharing

NOTE: this release doesn't support OCaml 5.4 nor Windows, because of the dependency on notty and nottui-unix. Hopefully we'll be able to relieve these constraints soon enough.

This release brings a new, dynamic logging approach where debugging data is written to a DB by a debugged program, and separately rendered for exploration by the new minidebug_view binary. Thanks to global (across a debugger runtime) sharing of common subexpressions of sexp values, version 3.0 scales to much bigger logging loads, in particular when the sharing opportunity is exposed. Taking full benefit of this requires some work on / adaptation of the debugged program, because persistent data-structures in OCaml typically don't expose the underlying tree structure, and their default sexp_of conversions serialize into flat lists.

Disclaimer: Unlike any previous version, ppx_minidebug 3.0 is almost entirely "vibe coded".

From the changelog:

Added

• Database backend with SQLite storage (minidebug_db.ml)
• Content-addressed value deduplication via MD5 hashing (O(1) lookup)
• Recursive sexp caching during boxify decomposition for structural deduplication
• Large value decomposition (boxify) with indentation-based parsing into nested scopes
• Schema versioning with automatic migration support (currently v3)
• Separate metadata database for tracking runs across versioned files
• Fast mode performance optimization (~100x speedup)
• Top-level transaction scoping (BEGIN when stack empty, COMMIT when stack clears)
• DELETE journal with synchronous=OFF (trades durability for speed)
• Signal handlers (SIGINT, SIGTERM) and at_exit for safe commits
• File versioning to prevent runtime conflicts
• Global atomic counter assigns unique run numbers (debug_1.db, debug_2.db, etc.)
• Symlink from base name to latest versioned file
• Multiple runtime instances in same process write to separate files
• Interactive TUI (minidebug_view db.db tui)
• Navigation: arrow keys/j/k, PageUp/PageDown, Home/End
• Search: / for multi-slot concurrent search (4 slots: S1-S4) with background Domain
• Search result navigation: n/N jump to next/previous match with auto-expand
• Quiet path filtering: Q stops highlight propagation at matching ancestors
• Configurable search ordering: o toggles Ascending/Descending scope_id
• Expand/collapse: Space toggles selected entry
• Real-time incremental search results with ancestor path highlighting
• CLI tool (minidebug_view) for database inspection
• stats: Database statistics and deduplication metrics
• show: Render trace tree with configurable depth/format
• compact: Function names only view with timing
• search: CLI-based pattern search
• export: Export to markdown format
• roots: Efficient top-level entry queries for large databases

Changed

• Breaking: Database backend is now the default and recommended approach
• Breaking: Static file generation (PrintBox/Flushing) marked as deprecated
• Breaking: Removed HTML/Markdown output, PrevRun diffs, file splitting, multifile output
• Breaking: Database schema field renames in v2:
• entry_id → scope_id (identifies parent scope)
• header_entry_id → child_scope_id (points to child scope)
• show_entry_ids → show_scope_ids
• Breaking: Removed run_id from composite keys (file versioning guarantees one run per file)
• Migration from static backends: change Minidebug_runtime.debug_file to Minidebug_db.debug_db_file
• global_prefix parameter renamed to run_name and stored in metadata database
• finish_and_cleanup() now optional (automatic at_exit handlers in Fast mode)
• Database created lazily (no file if log_level=0 or all logs filtered)
• values_first_mode default changed to true for better rendering

Fixed

• TUI crash on EINTR from Unix.select (terminal resize signals)
• Search highlight propagation to ancestors in TUI (retroactive highlighting for boxified values)
• Quiet path filter propagation (proper boundary marking)
• Multiple runtime instances writing to same database (file versioning eliminates conflicts)
• Memory issues with large databases (streaming instead of loading all entries)
• Boxify hash collisions (MD5 content hash instead of Hashtbl.hash)
• Boxify cross-recursion scope_id reference bug
• Database path resolution for versioned files in metadata queries
• Chronological ordering of trace output (unified seq_id ordering)
• Parameter/result value ordering (parameters before results)
• Retroactive no_debug_if implementation for database backend
• %log_entry dynamic scoping with database backend
• Orphaned logs support (query database for next available seq_id)
• Multiple tests migrated to database backend with proper expectations