dvir 3.4.2

New features

• New function dviGridSize() calculates the number of combinations for joint analysis.
• dviSolve() has a new argument maxAssign, used to skip joint analysis if too many combinations.
• dviSolve() output now includes detailed timings for each step of the analysis.
• The old parallelisation based on parallel/pbapply has been removed. A mirai-based replacement is planned for a future version. To avoid breaking existing code, the numCores argument remains in several functions, but is ignored with a warning.
• README er partly rewritten, including worked examples of dviJoint() and the dviSolve() workflow.

Other

• Updated dependencies for recent pedsuite releases, most notably pedtools >= 2.11.0.
• Minor optimisations of several functions, including dviJoint(), pairwiseLR().
• Fixed bugs in setPairing() and handling of missing pairings.
• Improved robustness of plotDVI().
• Brushed up the legacy function dviCompare().
• Added a testthat test suite.