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forrel 1.5.0

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@magnusdv magnusdv released this 01 Mar 06:27
v1.5.0
83f2d22

Breaking changes

  • The output of profileSim(x, N = 1) is now a single pedigree, instead of a list of length 1 (containing the pedigree). The new default is usually the desired object when N = 1 in interactive use. To override it, set simplify1 = FALSE.

New features

  • Added dataset FORCE describing the FORCE snp panel (Tillmar et al, 2021, doi:10.3390/genes12121968).

  • profileSim() now allows markers to be a list of frequency vectors, simplifying the code in unconditional simulations. For instance, the following command now works: nuclearPed() |> profileSim(markers = NorwegianFrequencies). Previously this required an intermediate step of setMarkers().

  • profileSim() has a new argument simplify1 (by default TRUE) controlling the output when N = 1.

  • In kinshipLR() the treatment of linked markers (with MERLIN) has been rewritten and is substantially more efficient. A new argument keepMerlin allows to keep merlin files for debugging.

  • missingPersonLR() was overhauled, making it more user friendly.

  • missingPersonPlot() has been modified and updated in sync with changes in pedtools.

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