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forrel 1.8.0

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@magnusdv magnusdv released this 07 May 11:06
v1.8.0
ce9ce7a

New features

  • New function rankProfiles() predicting the most likely profile of an untyped pedigree member.

  • In oneMarkerDistribution and twoMarkerDistribution, the argument partialmarker has been renamed to marker.

  • In profileSim() and markerSim(), the argument ids can be the name of a function, e.g., leaves.

  • kinshipLR gains argument likArgs for passing arguments to pedprobr::likelihood(). The motivation for this is to give access to the special lumping methods recently implemented in pedprobr, for example kinshipLR(..., likArgs = list(special = TRUE, alleleLimit = 20)).

Other

  • Updated dependencies to pedtools 2.8.1, pedmut 0.9.0 and pedprobr 1.0.0 (all related to special lumping).
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