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pedmut 0.8.0

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@magnusdv magnusdv released this 01 Apr 15:23

New features

  • New function makeReversible() implementing three transformations to reversibility.

  • mutationMatrix() and mutationModel() gain a transform argument for applying transformations to reversibility on the fly.

  • New function adjustRate() for adjusting the overall mutation rate of a mutation matrix.

  • mutationModel(model = "dawid", ...) replaces the function stepwiseReversible().

  • Random mutation models can now condition on a fixed overall mutation rate.

  • Include info on boundedness in the print method for mutation models.

Other

  • Refactored mutationMatrix() for better code maintainability.

  • Bug fix: Don't trivialise model name when there is only 1 allele.

  • Several minor improvements in documentation and examples.

  • Use rhub v2.