pedmut 0.9.0

New features

• New function lumpMutSpecial() implementing special lumping of mutation models. Only some cases are implemented so far, more may be added in the future.

• mutationMatrix() gains argument validate.

• New function makeStationary() replaces the previous stabilize() for PM-transformation to stationarity.

• As a shortcut for makeStationary(), the PM transformation may also be applied directly with mutationMatrix(..., transform = "PM") or mutationModel(..., transform = "PM").

Bug fixes

• Fixed a bug in makeReversible(..., method = "PR") failing to catch non-reversible inputs.

• Various minor fixes and code simplifications.