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pedprobr 0.9.2

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@magnusdv magnusdv released this 28 Feb 21:25

The version implements several improvements in the peeling algorithm, mostly invisible to end users (except that likelihoods calculations will be noticeably faster, and use much less memory, in many cases).

  • Less memory footprint for untyped founders with only 1 child: Sample alleles directly, avoid complete set of genotypes.

  • Avoid costly 3-dimensional arrays in peeling calculations.

  • More efficient genotype elimination in likelihood calculations involving markers without mutation modelling. As a result, this is now enforced (rather than optional) everywhere, and the eliminate argument is deprecated.

  • Added citation info.