Release v0.2.9

What's New

See individual changes below.

Features

• Add Docker dev stack to bake AnchorWave, PHGv2, and related tooling for Linux.
• Add scripts for building Docker image and testing (unit and integration)
• Update build.gradle.kts for different testing approaches
• Add new documentation to reflect clikt commands
• Add some initial tests to be fleshed out in a future update
• Add smallseq test data
• Add testing component to PR checks

Bug Fixes

• None

Breaking Changes

• None

Installation

Download the appropriate archive for your system:

• seq_sim-v0.2.9.tar - Unix/Linux/macOS
• seq_sim-v0.2.9.zip - Windows

Quick Start

# Extract the archive
tar -xf seq_sim-v0.2.9.tar
# or
unzip seq_sim-v0.2.9.zip

# Run the application
./seq_sim-v0.2.9/bin/seq_sim --help

Requirements

• Java 21 or higher

Full Changelog

Full Changelog: v0.2.8...v0.2.9