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Release v0.4.0

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@github-actions github-actions released this 01 Jun 15:55
· 49 commits to main since this release
v0.4.0
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What's New

See individual changes below.

Features

  • Add a top-level version field ("v1"/"v2") to the orchestrate YAML config. If missing, this will default to "v1".
  • Adds initial v2 pipeline (currently only generates initial gVCFs from AnchorWave)
  • Refactor Orchestrate.run() to be a thin wrapper for version dispatch.
  • Refactor orchestration into "v1", "v2", and "helper" objects.

Bug Fixes

  • None

Breaking Changes

  • None

Installation

Download the appropriate archive for your system:

  • seq_sim-v0.4.0.tar - Unix/Linux/macOS
  • seq_sim-v0.4.0.zip - Windows

Quick Start

# Extract the archive
tar -xf seq_sim-v0.4.0.tar
# or
unzip seq_sim-v0.4.0.zip

# Run the application
./seq_sim-v0.4.0/bin/seq_sim --help

Requirements

  • Java 21 or higher

Full Changelog

Full Changelog: v0.3.0...v0.4.0

Assets 4
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