Skip to content

Release v0.4.1

Choose a tag to compare

View all tags
@github-actions github-actions released this 02 Jun 19:30
· 41 commits to main since this release
v0.4.1
d2916b5
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

What's New

See individual changes below.

Features

  • Adds split-gvcfs command for splitting into "base" and "donor" sub-directories (mainly needed for automation purposes)
  • Extends mutate-assemblies command with a "batch-mode". Adds the parameters: --keyfile, --base-dir, and --mutation-donor-dir.
  • Adds highlighted steps into OrchestrateV2 automation chain
  • Adds initial draft for example v2 YAML
  • Adds unit tests for split-gvcfs and mutate-assemblies batch mode

Bug Fixes

  • None

Breaking Changes

  • None

Installation

Download the appropriate archive for your system:

  • seq_sim-v0.4.1.tar - Unix/Linux/macOS
  • seq_sim-v0.4.1.zip - Windows

Quick Start

# Extract the archive
tar -xf seq_sim-v0.4.1.tar
# or
unzip seq_sim-v0.4.1.zip

# Run the application
./seq_sim-v0.4.1/bin/seq_sim --help

Requirements

  • Java 21 or higher

Full Changelog

Full Changelog: v0.4.0...v0.4.1

Assets 4
Loading