T2T-Polish

Repository for the T2T CHM13 team-polishing group

Introduction

This repository is a shared code base for the polishing team, created over the T2T Workshop (Summer, 2020).

marker_assisted: marker assisted mapping Filter mapping file (bam/cram) to generate alignments that have support from markers. (Script incomplete, update will be followed)
filter_variant_calls: Filter variants and build a consensus

Name		Name	Last commit message	Last commit date
Latest commit History 77 Commits
coverage		coverage
filter_variant_calls		filter_variant_calls
genomescope		genomescope
kmetric		kmetric
marker_assisted		marker_assisted
merfin_parallel		merfin_parallel
variant_call		variant_call
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md