PlotCoverage: a method for visualization of read gene covarage in bulk or single-cell RNA-seq data

PlotCoverage is R package, included functions calculation and visualization of gene coverage for specified genome coordinates in bulk RNA-seq data. This method supports multigroup analysis.

Installation

Install the GitHub version:

if(!requireNamespace("devtools", quietly = TRUE))
    install.packages("devtools")

devtools::install_github("mamarkevi/plotCoverage")

Usage

1. Bulk example
2. Single cell example

Input

The input of PlotCoverage must be sorted bam-files of RNA-Seq read alignment and bam index-files. It allows to combine files into different groups to define differences of gene coverage between conditions.