v1.0.3

What's Changed

• fragment nbs by @jalew188 in #1
• Basic mass/fragment calculators in alphabase by @jalew188 in #2
• NIST elements and re-define AAs by @jalew188 in #5
• Io by @swillems in #4
• base library class by @jalew188 in #3
• quick fix for save_hdf codes by @jalew188 in #6
• Rename variable by @jalew188 in #9
• Doc and test by @jalew188 in #10
• PSM reader by @jalew188 in #11
• peptide hash by mmh3 package by @jalew188 in #13
• Mq phos fix by @jalew188 in #16
• Mmap io by @swillems in #14
• More docs / isotope calculation / absolute import by @jalew188 in #18
• Isotope & docs by @jalew188 in #19
• Mmap arrays by @swillems in #22
• Fix spec idx by @jalew188 in #23
• Docs for main functions and classes in AlphaBase by @jalew188 in #20
• CHORE by @jalew188 in #24
• diann CScore by @jalew188 in #25
• Development by @jalew188 in #26
• Bump version: 0.0.5 → 0.0.6 by @jalew188 in #27
• Development by @jalew188 in #28
• Nb docs by @jalew188 in #29
• Fasta by @jalew188 in #30
• Nb docs by @jalew188 in #31
• Nb docs by @jalew188 in #32
• Development by @jalew188 in #33
• Development by @jalew188 in #34
• Development by @jalew188 in #35
• Development by @jalew188 in #37
• Development by @jalew188 in #38
• Development by @jalew188 in #39
• Development by @jalew188 in #40
• LOESS Regression by @GeorgWa in #41
• updated weight function by @GeorgWa in #44
• Scoring by @jalew188 in #43
• rescore by @jalew188 in #51
• added fragment handling functionality by @GeorgWa in #47
• GeorgW Diann decoy fix by @jalew188 in #54
• Flat lib by @jalew188 in #53
• Reannotate fragments by @GeorgWa in #57
• Sphinx doc by @jalew188 in #56
• add nbdev_test to github actions by @jalew188 in #58
• Development by @jalew188 in #59
• Aligning spectral library names by @GeorgWa in #60
• Development by @jalew188 in #61
• Development by @jalew188 in #63
• Development by @jalew188 in #64
• Development by @jalew188 in #65
• frag_end_idx->frag_stop_idx by @jalew188 in #66
• v0.4.0 by @jalew188 in #67
• Uniformly distributed kernels for LOESS regression by @GeorgWa in #69
• DiaNN-like supervised Percolator by @jalew188 in #68
• v1.0.0 by @jalew188 in #70
• Development by @jalew188 in #71
• Python=3.9 workspace by @jalew188 in #72
• readme by @jalew188 in #73
• Development by @jalew188 in #75
• rename methods; tutorials for dev by @jalew188 in #76
• CHORE: prot decoy by @jalew188 in #77
• replace mmh3 with xxhash by @jalew188 in #79
• flexible frag representation to add frags by @jalew188 in #81
• use flat_frag_start/stop_idx other than frag_start/stop_idx for flatten fragments by @jalew188 in #84
• remove is_pd_dataframe attr for DataFrame in hdf by @jalew188 in #86
• Development by @jalew188 in #88
• Updated Library Handling by @GeorgWa in #91
• add possibility to redefine path where tempmmap arrays are saved by @sophiamaedler in #99
• New dtype by @jalew188 in #100
• msfragger pepxml reader support for c-term modifications by @yangkl96 in #85
• Calculate isotope intensity distribution using multiprocessing by @GeorgWa in #104
• Validation of pandas dataframes close #96 by @GeorgWa in #101
• count and filter by frag count, close #93 by @GeorgWa in #102
• Increase layout width for better display of long names by @GeorgWa in #106
• Development by @GeorgWa in #107

New Contributors

• @jalew188 made their first contribution in #1
• @swillems made their first contribution in #4
• @GeorgWa made their first contribution in #41
• @sophiamaedler made their first contribution in #99
• @yangkl96 made their first contribution in #85

Full Changelog: https://github.com/MannLabs/alphabase/commits/v1.0.3