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1.2.0-beta04

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@mathjeff mathjeff released this 28 Mar 07:07
· 18 commits to main since this release
1.2.0-beta04
d2c9438

Fixes:

  • Larger maximum reference contig length
  • Fixing a small nondeterminism in hashing the reference genome
  • Fix for the case of low indel extension penalty

Performance:

  • Better parallelization of hashing of the reference when there is a long contig or a single query
  • Flushing worker messages more often

Additions/adjustments to the output:

  • Small text-based graphs of alignment penalty and indel lengths
  • More accurate timing when running a single query
  • Replacing empty vcf fields with '.'

Augmenting the library API:

  • QueryAlignment.formatVerbose() function now available to users of the API
  • Api.newDatabase support for custom sequence names
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