iplotx (network plotting) #205
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
PR Summary
After discussions with @tacaswell over a few years and as a rewrite of my matplotlib backend within igraph, I have now completed iplotx (https://iplotx.readthedocs.io/en/latest/), a universal package to plot networks/graphs and trees in Python. It natively supports both networkx and igraph as well as an internal zero-dependency format for networks, and four separate popular libraries plus an internal zero-dependency format for trees. Examples are at:
https://iplotx.readthedocs.io/en/latest/gallery/index.html
This PR requests to add
iplotxto the list of third-party packages using matplotlib as a framework.It's pretty straightforward except for whether this deserves its own category. Network visualisation is a big thing and I could not find any category that fits in the pre-existing ones. It's not "domain specific" - in fact, the preprint was just rejected by a bioinformatics journal on account of being not domain specific! - and I'm not sure what other category it would fit. Open for suggestions.
Thank you!