CellMorphR v3.0.1

Example datasets, optional timepoints, and renameable sample/timepoint labels.

Download and run

Grab CellMorphR-v3.0.1.zip, unzip, and double-click run_cellmorphr.bat (Windows), Run CellMorphR.command (macOS) or ./run.sh (Linux). The bundle now includes two example datasets you can load straight from the Data tab.

What's new

Know how to format your data

• Two example datasets ship with the app: example_data.csv (time course - 4 conditions x 4 timepoints x 3 biological replicates) and example_data_no_timepoints.csv (single snapshot - 4 samples x 3 replicates)
• New DATA_FORMAT.md: required vs optional columns, worked examples for both designs, and the design choices that affect your statistics

Timepoints are now optional

• Previously Time_min was required, so single-snapshot experiments could not be loaded at all. Leave the column out and the app compares your samples directly, with the samples on the x axis and nothing labelled "min"
• The column-mapping dialog offers "(no timepoints - compare samples directly)"
• Distributions, ridge plots, ECDF/histogram faceting and the significance brackets all adapt to a design with no time axis
• The Trajectories tab explains itself instead of drawing a meaningless single-point plot

Rename what appears on the graph

• Timepoint labels are now editable - call them "0 h", "Uninduced", "Pre-treatment" - from the Data sidebar or by double-clicking any figure
• The underlying time stays numeric, so ordering, trajectories and the dose-response trend test are unaffected
• Condition/sample renaming (already in v3.0.0) sits alongside it; both apply across every figure, table and export

Fix

• Significance brackets parsed the numeric time back out of the axis label text, which broke as soon as a timepoint was renamed or the data had no time column at all