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CellMorphR v3.1.0

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@mbaffour mbaffour released this 28 Aug 17:49
· 4 commits to main since this release
v3.1.0
3f9ff24

Interactive in-app guide, a data checker, and a script builder that writes your analysis for you.

Download and run

Grab CellMorphR-v3.1.0.zip, unzip, then either double-click run_cellmorphr.bat (Windows) / Run CellMorphR.command (macOS) / ./run.sh (Linux), or open CellMorphR.Rproj or app.R in RStudio and click Run App.

What's new

New Guide tab - interactive documentation inside the app

  • Quick Start - the five steps from loading data to exporting a figure
  • Check My Data - a plain-language report of what the app detected: how many samples and measurements, whether you have a time course, and a verdict on your replicate design. Three or more replicates per group is fine; two is flagged as weak with the reasons and better alternatives; one is flagged as untestable; unbalanced replicate counts are called out
  • Script Builder - choose your measurement, grouping, statistical unit, test, correction, figure type and format, optionally loop over every measurement or add a dose-response trend test, then generate a complete R script and copy or download it
  • Statistics Help - which test, which correction, how many replicates you need, and what to report

The generated script sources CellMorphR_v3.R, so it reuses the app's own validation, replicate summarising, pairwise tests and publication theme. The numbers and the figure match what you saw in the app exactly. Use it to re-run an analysis when data is updated, batch over many measurements, or attach a reproducible script to a paper.

analysis_template.R ships the same starting point as a plain file.

Documentation

The README's user guide was still describing the six tabs of v1.0. It now covers all ten tabs, plus figure editing (double-click to rename samples and timepoints), every export format including editable PowerPoint, the statistical guardrails, and scripting.

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