CFU Plot Studio v0.1.0

CFU Plot Studio v0.1.0

Initial public release of CFU Plot Studio.

Highlights

• R Shiny app for replicate-level CFU plotting.
• Neutral synthetic example dataset.
• Publication-focused bar plots with customizable fonts, colors, axis limits, major/minor ticks, legend placement, plot boxes, and export dimensions.
• Variation summaries: SD, SEM, 95% CI, IQR, and min-max range.
• Variation display styles: capped error bars, uncapped whiskers, mean point plus whiskers, crossbar intervals, or replicate points only.
• Replicate-level statistics on log10(CFU).
• Supported comparisons: sample/vector, timepoint, treatment versus control, and all treatment pairs.
• Multiple-comparison correction options.
• Figure QA checklist.
• Exports for PNG, PDF, SVG, PowerPoint, animated GIF, reveal-slide PowerPoint, cleaned data, summary tables, QC tables, statistics, and ANOVA.
• Reproducibility exports: plot preset JSON, analysis manifest JSON, and reproducible R script.
• GitHub Pages landing page and blog-style project post.
• Citation and Zenodo metadata files.

Validation

• App parses with R 4.3.2.
• Neutral demo data loads and plots.
• Public release folder scanned for private experiment terms.
• GitHub Pages builds from docs/.