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Michael A. Cianfrocco edited this page Apr 10, 2015 · 16 revisions
A wiki protocol describing spot instance price history analysis and image processing results from Cianfrocco & Leschziner, 2015.

Table of contents:

Spot instance availability analysis:

  1. [Retrieve spot instance price histories] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-EMCloudProcessing/wiki/Retrieve-spot-instance-price-histories)
  2. [Calculate percentage time spot instance prices spend below $0.35, $0.45, $0.55, and $0.65/hr] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-EMCloudProcessing/wiki/Calculate-percentage-time-spot-instance-prices-spend-below-given-price)

Cryo-EM image analysis of 80S yeast ribosome data (EMPIAR 10002):

  1. [Download micrographs and data] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Download-micrographs-and-data)
  2. [Extract particles] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Extract-particles)
  3. [Perform 3D classification] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Perform-3D-classification)
  4. [Refine single model to high resolution] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Refine-single-model-to-high-resolution)
  5. [Calculate gold standard FSC & filter map] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Calculate-gold-standard-FSC-&-filter-model)

Table of contents:

[Home] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki)

Spot instances:

  1. [Retrieve spot instance price histories] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-EMCloudProcessing/wiki/Retrieve-spot-instance-price-histories)
  2. [Calculate percentage time] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-EMCloudProcessing/wiki/Calculate-percentage-time-spot-instance-prices-spend-below-given-price)

Cryo-EM:

  1. [Download micrographs and data] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Download-micrographs-and-data)
  2. [Extract particles] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Extract-particles)
  3. [Perform 3D classification] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Perform-3D-classification)
  4. [Refine single model to high resolution] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Refine-single-model-to-high-resolution)
  5. [Calculate gold standard FSC & filter map] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Calculate-gold-standard-FSC-&-filter-model)

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