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Download micrographs and data

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Michael A. Cianfrocco edited this page Oct 1, 2015 · 7 revisions

Download micrographs from EMPIAR database

EMPIAR accession number 10002:

http://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10002

Download data files from Data Dryad

The particle coordinates, CTF information, and refinement info are in a zipped folder hosted by Data Dryad:

http://datadryad.org/resource/doi:10.5061/dryad.9mb54

Table of contents:

[Home] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki)

Spot instances:

  1. [Retrieve spot instance price histories] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-EMCloudProcessing/wiki/Retrieve-spot-instance-price-histories)
  2. [Calculate percentage time] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-EMCloudProcessing/wiki/Calculate-percentage-time-spot-instance-prices-spend-below-given-price)

Cryo-EM:

  1. [Download micrographs and data] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Download-micrographs-and-data)
  2. [Extract particles] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Extract-particles)
  3. [Perform 3D classification] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Perform-3D-classification)
  4. [Refine single model to high resolution] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Refine-single-model-to-high-resolution)
  5. [Calculate gold standard FSC & filter map] (https://github.com/mcianfrocco/Cianfrocco-and-Leschziner-2014-EMCloudProcessing/wiki/Calculate-gold-standard-FSC-&-filter-model)

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