[REMS-296] Questionnaire package

.gitignore

@@ -7,4 +7,5 @@ logs/
 node_modules/
 dist/
 .idea/
-.DS_Store
+.DS_Store
+tingo_db/

env.json

@@ -13,7 +13,7 @@
   },
   "WHITELIST": {
     "type": "string",
-    "default": "http://localhost"
+    "default": "http://localhost, http://localhost:3005"
   },
   "LOGGING_LEVEL": {
     "type": "string",
@@ -30,5 +30,9 @@
   "AUTH_SERVER_URI": {
     "type": "string",
     "default": "http://localhost:8090"
+  },
+  "VSAC_KEY": {
+    "type": "string",
+    "default": "changeMe"
   }
 }

patches/@projecttacoma+node-fhir-server-core+2.2.8.patch

@@ -0,0 +1,16 @@
+diff --git a/node_modules/@projecttacoma/node-fhir-server-core/dist/server/resources/4_0_0/schemas/datarequirement.js b/node_modules/@projecttacoma/node-fhir-server-core/dist/server/resources/4_0_0/schemas/datarequirement.js
+index ef49581..6868203 100644
+--- a/node_modules/@projecttacoma/node-fhir-server-core/dist/server/resources/4_0_0/schemas/datarequirement.js
++++ b/node_modules/@projecttacoma/node-fhir-server-core/dist/server/resources/4_0_0/schemas/datarequirement.js
+@@ -152,9 +152,9 @@ module.exports = class DataRequirement {
+           return;
+         }
+
+-        let Element = require('./element.js');
++        let CodeFilter = require('./datarequirementcodefilter.js');
+
+-        this.__data.codeFilter = Array.isArray(value) ? value.map(v => new Element(v)) : [new Element(value)];
++        this.__data.codeFilter = Array.isArray(value) ? value.map(v => new CodeFilter(v)) : [new CodeFilter(value)];
+       }
+     });
+     Object.defineProperty(this, 'dateFilter', {

src/cds-library/CRD-DTR/IPledge/R4/files/IPledgePrepopulation-0.1.0.cql

@@ -0,0 +1,10 @@
+library IPledgePrepopulation  version '0.1.0'
+using FHIR version '4.0.0'
+include FHIRHelpers version '4.0.0' called FHIRHelpers
+include CDS_Connect_Commons_for_FHIRv400 version '1.0.2' called CDS
+include DTRHelpers version '0.1.0' called DTR
+
+codesystem "ICD-10-CM": 'http://hl7.org/fhir/sid/icd-10-cm'
+codesystem "LOINC": 'http://loinc.org'
+codesystem "SNOMED-CT": 'http://snomed.info/sct'
+codesystem "RXNORM": 'http://www.nlm.nih.gov/research/umls/rxnorm'

src/cds-library/CRD-DTR/IPledge/R4/files/IPledgePrescriberEnrollmentPrepopulation-0.1.0.cql

@@ -0,0 +1,51 @@
+library IPledgePrescriberEnrollmentPrepopulation  version '0.1.0'
+using FHIR version '4.0.0'
+include FHIRHelpers version '4.0.0' called FHIRHelpers
+
+codesystem "ICD-10-CM": 'http://hl7.org/fhir/sid/icd-10-cm'
+codesystem "LOINC": 'http://loinc.org'
+codesystem "SNOMED-CT": 'http://snomed.info/sct'
+codesystem "RXNORM": 'http://www.nlm.nih.gov/research/umls/rxnorm'
+
+code "Oncologist":'394592004' from "SNOMED-CT"
+
+parameter device_request DeviceRequest
+parameter service_request ServiceRequest
+parameter medication_request MedicationRequest
+
+context Patient
+
+define Today: Today()
+
+define "SigningProviderReference": Coalesce(device_request.performer.reference.value, service_request.performer.reference.value, medication_request.requester.reference.value)
+// Get Practitioner
+define OrderingProvider: singleton from (
+  [Practitioner] practitioner
+    where ('Practitioner/' + practitioner.id) =  SigningProviderReference)
+
+define Qualifications: singleton from (
+    "OrderingProvider".qualification[0].code.coding[0].code.value)
+
+define Credentials: {Qualifications}
+
+define PractitionerRole: singleton from (
+  [PractitionerRole] prole
+    where (prole.practitioner.reference.value) = SigningProviderReference)
+
+define Specialty:  FHIRHelpers.ToConcept("PractitionerRole".specialty[0] as FHIR.CodeableConcept).codes
+
+define PreferredCommunication: {(singleton from (
+  "OrderingProvider".telecom telecom where telecom.rank.value = 1)).system.value}
+
+define OrgName: ([Organization] org).name.value
+
+define MD: (singleton from (
+  "OrderingProvider".identifier identifier
+    where identifier.type.coding[0].code = 'MD')).value.value
+
+define ValidIPledgeCredentials: 
+  from "OrderingProvider".qualification qualification 
+    where qualification.identifier.system.value = 'http://www.nlm.nih.gov/research/umls/rxnorm' and qualification.identifier.value.value = '6064'
+
+define ThirdPartyCredentials: ValidIPledgeCredentials[0].code.text.value
+define ThirdPartyIssuer: ValidIPledgeCredentials[0].issuer.display.value

src/cds-library/CRD-DTR/IPledge/R4/files/IPledgeRule-0.1.0.cql

@@ -0,0 +1,45 @@
+library IPledgeRule version '0.1.0'
+using FHIR version '4.0.0'
+include FHIRHelpers version '4.0.0' called FHIRHelpers
+
+
+parameter Patient Patient
+parameter medication_request MedicationRequest
+parameter medication_dispense MedicationDispense
+parameter medication_statement MedicationStatement
+
+define RULE_APPLIES:
+    true
+
+define PRIORAUTH_REQUIRED:
+  false
+
+define DOCUMENTATION_REQUIRED:
+  true
+
+define RESULT_InfoLink:
+    'https://www.accessdata.fda.gov/drugsatfda_docs/rems/Isotretinoin_2021_10_8_REMS_Document.pdf'
+
+define INFO_PATIENT_FactSheet:
+    'https://www.accessdata.fda.gov/drugsatfda_docs/rems/Isotretinoin_2021_10_8_Fact_Sheet.pdf'
+
+define INFO_PATIENT_GuideForPatientsWhoCanGetPregnant:
+    'https://www.accessdata.fda.gov/drugsatfda_docs/rems/Isotretinoin_2021_10_8_Guide_for_Patients_Who_Can_Get_pregnant.pdf'
+define INFO_PATIENT_ContraceptiveCounselingGuide:
+    'https://www.accessdata.fda.gov/drugsatfda_docs/rems/Isotretinoin_2021_10_8_Contraception_Counseling_Guide.pdf'
+define INFO_PRESCRIBER_PrescriberGuide:
+    'https://www.accessdata.fda.gov/drugsatfda_docs/rems/Isotretinoin_2021_10_8_Prescriber_Guide.pdf'
+define INFO_PRESCRIBER_ComprehensionQuestions:
+    'https://www.accessdata.fda.gov/drugsatfda_docs/rems/Isotretinoin_2021_10_8_Comprehension_Questions.pdf'
+
+define RESULT_QuestionnaireOrderUri:
+    'Questionnaire/IPledgeRemsPatientEnrollment'
+
+define RESULT_QuestionnairePrescriberEnrollmentUri:
+    'Questionnaire/IPledgeRemsPrescriberEnrollmentForm'
+
+define RESULT_requestId:
+  medication_request
+
+define RESULT_dispense:
+  medication_dispense

src/cds-library/CRD-DTR/IPledge/R4/resources/Library-R4-IPledge-prepopulation.json

@@ -0,0 +1,99 @@
+{
+    "resourceType": "Library",
+    "id": "IPledge-prepopulation",
+    "url": "http://hl7.org/fhir/us/davinci-dtr/Library/IPledge-prepopulation",
+    "name": "IPledge-prepopulation",
+    "version": "0.1.0",
+    "title": "IPledge Prepopulation",
+    "status": "draft",
+    "type": {
+        "coding": [
+            {
+                "code": "logic-library"
+            }
+        ]
+    },
+    "relatedArtifact": [
+        {
+            "type": "depends-on",
+            "resource": "Library/FHIRHelpers-4.0.0"
+        },
+        {
+          "type": "depends-on",
+          "resource": "Library/CDS_Connect_Commons_for_FHIRv400"
+        },
+        {
+          "type": "depends-on",
+          "resource": "Library/DTRHelpers"
+        }
+    ],
+    "dataRequirement": [
+        {
+            "type": "Condition",
+            "codeFilter": [
+                {
+                    "path": "code",
+                    "valueSet": "https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1219.81"
+                }
+            ]
+        },
+        {
+            "type": "Condition",
+            "codeFilter": [
+                {
+                    "path": "code",
+                    "valueSet": "https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1219.198"
+                }
+            ]
+        },
+        {
+            "type": "Procedure",
+            "codeFilter": [
+                {
+                    "path": "code",
+                    "valueSet": "https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1219.90"
+                }
+            ]
+        },
+        {
+            "type": "MedicationRequest",
+            "codeFilter": [
+                {
+                    "path": "code",
+                    "valueSet": "https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1219.192"
+                }
+            ]
+        },
+        {
+            "type": "MedicationRequest",
+            "codeFilter": [
+                {
+                    "path": "code",
+                    "valueSet": "https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1219.193"
+                }
+            ]
+        },
+        {
+            "type": "Observation"
+        },
+        {
+            "type": "MedicationStatement",
+            "codeFilter": [
+                {
+                    "path": "code",
+                    "valueSet": "https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1219.197"
+                }
+            ]
+        }
+    ],
+    "content": [
+        {
+            "contentType": "text/cql",
+            "data": "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"
+        },
+        {
+            "contentType": "application/elm+json",
+            "data": "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"
+        }
+    ]
+}